Micropterus salmoides (largemouth bass): 119885938
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Entry
119885938 CDS
T07309
Symbol
ciita
Name
(RefSeq) uncharacterized protein ciita isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
msam01001
]
119885938 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
msam04054
]
119885938 (ciita)
Enzymes [BR:
msam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
119885938 (ciita)
Protein kinases [BR:
msam01001
]
Serine/threonine kinases: Other
TAF1 family
119885938 (ciita)
Pattern recognition receptors [BR:
msam04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
119885938 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
nSTAND3
AAA_16
nSTAND_NTPase5
DUF5741
AAA_22
TsaE
AAA
Motif
Other DBs
NCBI-GeneID:
119885938
NCBI-ProteinID:
XP_038552235
LinkDB
All DBs
Position
Unknown
AA seq
1660 aa
AA seq
DB search
MARFEEVLDGVRLALTRASPAEIRALLECLVEEQIISEAYSKSLSLHRLTEGITPESVHR
ETTCKPGSATHRHLNQGHLTGCAVTDHNQSRSEPVLSVDDHNGTRSRPTFHPLSDEHYQN
HRLFSTPIVCDYQCSLAIDGEMKELLRSAKSTQKAVSDNERRAQGILEDEKEWLEQVEEA
ARRIAVPLWQHWDRGQTMLLPLVPCMTAGCATSENTAADIAAQCAVLNMEEETELAVACK
TLDLYADIFRCTEAEVTSGTLDTEGAVDAPKGLCFSTLNGTETPALNRYHFSVSGTEKSA
SPVKACMATDTNNNITDRLEGDLNVCWVADRTTNTTDNLLHLAGDIQCGTDAGFTGDFAY
LLSSCRAKDNPTDAQDNYLYSNTDHSMALGVLDNVENVFRTAYGTKTCSTNGITDTHEDK
EDKERVDSHWGAKMQEIELDQIICPDLGDLPDDLSEYMNEDYLLKTVDTEVLFGDPWWNC
EEELNNCSDVSIPTELPRPDTHQQRQQNKLPAKTNDKRKRPRVPRSQRCTDENTPRPKRQ
RAAGRPKTTEAQAEAQAEPTVTQCSGTGSDSSPAATAGLSTTPPRIVHLHPSIQFITIPD
TPQYQVVQTLRLSPPVIRFPLSNTATTPTYILVPAASPPCKRQVPPLSPVDGAVAPIQMS
SSPPGSLSDTASKAMSPPCASPLSPSHESTCKESPLPPSPTVLDIPQVVKEYIQEAKAHM
SQTCQEMETGLSLNSHYVDVQVSQREILRSGKSTNKLLDKELVIMGHTDRQKSLLGQSQI
FEGSNGDKPKRYILLLGNAGMGKTTLIKKLCLDWSRDCIPQFDFIFLLDGKALTLTDPAF
SLQTLLLNLSSFAPSCMDPEAVYTQIFAAPKRVLIIFDGFAELRDYETLLQTQEKDLVTS
LQKDSKAQIYTVRQLYSAILQRVLLPGCTLLLSTRPRGTASQLLRRTDSLLEVCGFTSTN
VETYLSQYFTDPAVRASALDCLKNCSYPHLLCWNPGLCRLVCLVLEQSNGLEVLPKTLTG
LCHQVLRLIIEKDSKSIHSHAEPQTQISVQSVEETQTQISSSSQMKKYPKNTRTKSSAEV
RTRSRTQRARGAKIQEEEEVDGEDIKSVGGEVDRTEERELLSQLSALAWEGVKTNSSILP
TGRTISTKLKAFGHRTGLFLSYQLRTRQVVSSGEKEGGGREDREETGGGEKAQKMGKRGR
TDNANTETGDKHILLWANPFIQSYLAGVHLSLSRNASDRTFLQTLPFQLVPKGRRRIQRE
ELELTQQFVVGLLFHNRTELQRLHSCTETVFRDVVVGKQALVTKHIEGLSLGDLSPAQVL
EACHYVYEASFTHGDGSRDSGNTQLVAHLAANLPEVLTFHGVPLNPADVFAVQNVLERGG
AEGRSFCLDLEDSGIHISGLRALVGLSNINTYRACIADAITLWEQLEQSGEESLLQGAVS
KFKIHPLKATQVCHIEHLAKMVNIHMHKRLSDSFSQSHSILAEGVPAVNELHKLEFELGP
ENGPLALPKLWELLPGLHNLQHLDLENSKIGDKGAEKLADALVSLCFLEILNLSQNCIGD
EGVKKLSTTLRDLPKLHCLSLYSNVISDEGAESLAAVLPHMASLTDLDVKYNKLTDVGAH
SLGVSLRNCKRMKTLRMWNQCIPYGVFERLQLQDSRILWH
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atggcccggttcgaggaagttctggacggagtgcgtctggctctgaccagggcctctcct
gctgagatccgagcccttctggagtgtttggtggaggagcagatcatctcggaggcctac
agcaagagcttgagtctgcaccgacttactgaggggatcacacctgagtcagttcataga
gaaacaacatgtaaaccaggatctgccacccaccggcacctcaaccaaggtcatctcaca
ggatgtgccgtcactgaccacaaccagtcaagatcggagcctgtattgtcagtggatgac
cataacggcacaaggtccaggccaacatttcatccactgtctgatgagcactaccaaaat
cacaggctattttctacaccgatagtatgtgactaccaatgcagtttggctatagatggt
gaaatgaaagaactgctgagaagtgcaaaatcaacacagaaggcagtgagtgataatgaa
agaagggctcaggggattttggaggatgagaaggagtggttagagcaggtagaggaggcg
gccagaaggatagctgtccctctgtggcagcactgggacagaggacaaacgatgttgctg
cctctggttccttgtatgactgctggctgtgcaacaagtgaaaacacagcggcagacatt
gcagcacaatgcgctgttttgaatatggaagaggaaacagagcttgcagtcgcttgcaag
acacttgatttgtacgctgacatctttaggtgcacagaggctgaagtcacaagcggcaca
ctggatacagagggagccgtcgacgcaccaaaaggcctgtgtttctccacattaaacggc
acagaaacacctgcattgaacaggtatcatttcagtgtctctggcacagaaaagagtgcc
tcacctgttaaagcctgcatggcaacggacactaacaacaacatcacagacaggctggag
ggtgatctcaatgtctgctgggtcgctgacaggacaacaaacacaacggacaacctgctt
catttggcaggagacattcagtgtggcacagatgcagggtttacaggagactttgcatat
ttactttcttcctgcagagcaaaagacaatcctactgacgcacaagataactacttgtac
tccaacacagatcacagcatggcattaggtgttttagacaatgtagaaaatgttttcagg
actgcttatggtaccaaaacgtgcagcactaatggcataacagacacccatgaggataaa
gaggataaggaaagggtggattcacactggggagccaagatgcaggaaatagaactggac
caaattatctgtcctgatttaggggatctaccagatgatttatctgaatacatgaatgaa
gattacctgttaaagacagtggacacagaagtgctctttggcgatccatggtggaattgt
gaggaggaactcaacaactgcagtgacgtctccatcccaacagagttgcccaggccagac
acccaccagcagagacagcagaacaaactaccagccaaaacaaatgacaagaggaaaaga
cccagagttcctcgatcacaacggtgcactgatgagaacacacctaggccaaaaaggcaa
agagcagcaggccgaccaaaaaccacagaggcacaagcggaggcacaagcggagccaact
gtcactcaatgctctggcacaggctcagactcaagtccagcagcgacagcaggcctctcc
acgactcctccaagaatcgttcatcttcatccctccattcagtttatcaccatcccagac
actccacaatatcaggtcgttcagacactgaggctctctcctccagttattagatttcca
ctctccaatacagctactacacctacttacatattagttcctgctgcctcaccaccctgc
aaacgccaagtgccacccctctccccagtggacggtgcagtagcaccaatccaaatgagt
tcatcccctccaggatctttgtcggacacagctagcaaagccatgtctcccccttgtgcc
tcaccactctctcccagccatgagtctacatgtaaggaatcacctcttcctccatccccc
actgtccttgatattccacaggtagtaaaggaatacattcaggaggctaaagcccacatg
agtcaaacctgccaggaaatggagacaggccttagcctaaactctcattacgtcgatgtg
caagtgagccagagagagattcttcgctctggaaaaagtacgaacaaacttctggacaag
gagctagtcatcatgggacacacagatcggcaaaaaagcttgttggggcagagtcagatc
ttcgaaggctcaaatggagacaaacccaaacgctacatattgctactcggcaatgctggc
atgggaaaaacaacgctgatcaagaaactgtgtcttgactggtccagagactgtatcccc
cagtttgactttatcttcttattagacggcaaagcactcactttaacagatccggccttc
agccttcagactctcctgttaaacctgtcctcttttgccccttcctgcatggacccagag
gcagtgtacactcaaatctttgcagcccctaagcgcgtgctcatcatttttgatgggttt
gctgagttgcgggactatgaaactctgctccagactcaggaaaaagacctggtaacatca
ttgcagaaagacagtaaagcacagatctacacagtaagacagttgtactctgccatcctt
cagagggtcctccttccaggctgtactcttctgctctctacccgaccaagaggcactgcc
agtcagctactcagacggacggacagccttttggaggtgtgtggcttcacctccacaaat
gtagagacatatttgtcccaatacttcactgatcctgccgtcagagcgtctgctttggac
tgcttaaaaaactgtagctatccacatctcctctgctggaatcccggactatgtcggttg
gtctgcttggttttagaacagtccaatggtttggaggtcctaccaaaaactttaactggg
ctctgccatcaagtgcttcgcctaataattgaaaaggacagtaagagcatacactcacat
gctgaacctcaaacacaaatatctgtgcaatctgtagaagaaacccagacacaaatctca
agtagttctcaaatgaagaagtatcccaaaaatactcggacaaagtcgagtgcagaggtt
cgcactcgttctcgtacccaaagagcaaggggggcaaaaatacaggaggaagaggaagtg
gatggagaggacataaagagtgttggcggggaagtagatagaacagaggagagagagttg
ctgtctcagctgagtgctttggcctgggaaggggtcaaaacaaactcctccatcctcccc
acaggacggaccatatctacaaaactcaaggcattcggccacaggacagggctcttcttg
tcttatcaactgaggacgaggcaggttgtctcgagtggtgagaaagagggaggaggaaga
gaggacagagaagaaacaggaggaggagagaaagcacaaaagatgggaaagagagggagg
accgacaatgcaaacactgaaaccggtgacaaacacatcctgttgtgggccaaccctttc
attcagagttacttggcaggggtccatttgtctctgtcaaggaatgcatcagatcgtact
ttcctccagaccctccctttccagctggtcccaaagggacgccgtcgaattcaaagggag
gagcttgagctcactcaacaatttgtggtcgggctcctgttccacaacaggacagagctg
cagaggcttcactcttgcacagagacagtatttagagatgtggtggttggcaagcaagct
ttagtaacaaaacacattgaaggcctttctcttggtgacctgagccccgcccaggtcctg
gaggcttgtcactatgtttatgaggcaagtttcacacatggtgatggtagcagagacagc
ggcaacacacaattagttgctcacctggcagcgaatcttcctgaagtcctaacatttcat
ggagttccactaaacccagcggacgtcttcgctgtgcagaatgttctagaaaggggtgga
gctgaaggtagaagtttctgtttggatctagaggattctgggatacatatctctggactc
agagctctggtggggctcagcaacatcaacacatacagggcatgcattgctgatgccatc
accttatgggagcagctagagcagagtggtgaagaaagtctcctacaaggggcagtgtcc
aaattcaagatccaccctctgaaagccacacaagtgtgtcacatagagcacctggcaaag
atggtgaacatacacatgcacaagaggctgtcggacagtttcagccaatcacattccatc
ttggcagagggcgtaccagctgtcaatgagttgcacaagctggagtttgagctaggtcca
gagaatggtcccctggctcttcccaagctgtgggagctcctgccaggtctacataacctg
caacacttagatcttgagaacagtaagataggggacaaaggagcagagaaattggctgat
gctttggtctcactttgtttcctggagattctaaatctgtcacagaattgtattggtgac
gaaggggtgaagaaactgtcaactacgctgagggatctgcccaaactgcactgtttaagt
ctctatagtaatgtgatttctgatgaaggggcagagagtttagcagctgtcctgccacac
atggcctccctcactgacctggatgtgaagtataacaagctaacagatgttggcgcacac
agcctaggagtcagtctgaggaactgtaaaagaatgaagactttgaggatgtggaaccag
tgtattccatatggagtgtttgagagacttcagctgcaggacagccggatcctttggcat
tag
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integrated database retrieval system
