Micropterus salmoides (largemouth bass): 119885994
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Entry
119885994 CDS
T07309
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04510
Focal adhesion
msam04512
ECM-receptor interaction
msam04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119885994 (col2a1b)
04518 Integrin signaling
119885994 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119885994 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
msam00536
]
119885994 (col2a1b)
Glycosaminoglycan binding proteins [BR:
msam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119885994 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
119885994
NCBI-ProteinID:
XP_038552342
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVFLLAVVRCQEEDGQEDVFTCVQDGQSYSDKDVWKPEPCRICV
CDTGAILCDDIVCEELKDCPKPEIPFGECCPICAADQPPPFGVPGAKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGPRGARGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQA
GPMGPRGPPGPSGKPGDDGEPGKPGKSGERGPAGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAVGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIP
GSKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPV
GLQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGANGDPGRPGESGLPGARGLTGRAGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGSQGLQ
GPRGLPGTPGTDGPKGAIGPAGGPGAQGPPGLQGMPGERGAAGIPGPKGDRGDIGEKGPE
GASGKDGARGLTGPIGPPGPSGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGADGQPGTKGEQGEPGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPAGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEK
GDPGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDIGNTGPAGAPGAPGSPGAP
GPVGPTGKQGDRGESGAQGPAGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPAGKDGGNGLPGPIGPPGPRGRSGET
GPSGPPGNPGPPGPPGPPGPGIDMSAFAGLGTIEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSRKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVLPKPSTIPRKNWWSSKSKERKHIWFGETMNGGFHFSYGDDTLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASMANLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtatttcta
ttagccgttgtgagatgtcaggaggaggacggccaggaggatgtttttacctgtgtacaa
gatggacagagctatagcgacaaggatgtatggaaaccagagccttgtcgcatctgtgtg
tgtgacactggagccatcctgtgtgatgacattgtctgcgaggaactaaaagactgcccc
aaacctgaaatcccattcggagagtgttgccccatctgcgcagctgaccagcctccaccc
tttggagtacctggagctaagggtcagaaaggtgaacccggagacattaccgatgttgta
ggaccaagaggaccaagtggcccaatgggcccaccaggagagcaaggaccccggggagcg
agaggcgataaaggagagaagggaagccctggtccccggggcagagatggtgaacctggc
acccctggaaaccctggcccccctggacctccaggacctaacggaccccctggccttggt
ggaaactttgctgctcagatggctggtggcttcgacgagaaggctggcggcgcgcagatg
ggtgtgatgcaaggaccaatgggccctatgggtcccagaggaccacctggccccaccgga
tcacctggcccacaaggattccaaggcaacccaggagaggctggagaacctggacaagct
ggcccaatgggtccccgtggcccccctggaccttctggaaaacctggagatgatggtgag
cctggaaaaccaggcaaatctggcgagcgtggacctgctggacctcagggagctcgtgga
ttcccaggaactcctggcctgcctggcatcaagggacacagaggttatccaggtcttgat
ggtgcaaagggagagactggagctgttgggtcaaagggtgagagtggtgctcccggagag
aatggcgctcctggaccaatgggacctcgcggtctgcctggtgagagaggccgtcctgga
cccagtggagttgctggagcacgtggaaatgatggcttgcccggtcctgctggtccccct
ggccccgtcggtccttctggagctccaggcttccctggctctcctggttcaaagggagaa
gctggtcctactggtgctcgtggacctgagggtgctcagggaccccgtggagagtctggc
actcccggatcacctggacctgctggcgcttctggaaaccctggtactgatggtattccc
ggatccaaaggatcagctggtgctcctggtatcgctggtgctcctggtttccctggacct
cgtgggcctcccggacctcagggagcaactggacctctcgggcccaaaggaacatctgga
gaccccggtattccagggttcaaaggagaggctggacccaaaggagaaattggaccagtt
ggtcttcaaggagctcctggcccacaaggagaagagggcaagagaggacccaggggtgag
cctggtgctgctggaccacttggacctcctggcgaaagaggagcccctggtaaccgtggt
ttccctggtcaagacggtctggctggtcctaaaggagcccctggtgagcgtggaccatct
ggtgccagtggtcccaagggtgccaatggtgaccctggccgtcccggagagtctggtctg
cctggtgccagaggtctgactggacgcgctggtgatgcgggtcctcaaggcaaagttgga
ccttctggagctcctggtgaggacggtcgcccaggaccccccggcccacagggagcccgt
ggacagcctggtgtcatgggattccccggacccaagggagcaactggtgagcctggcaag
tctggtgagaaaggactgggtggagctcctggtctgagaggtctgcccggcaaagatgga
gaaaccggcgctgctggaccccccggccccgccggccctgctggagagagaggagagcaa
ggacagcctggtccctcaggtttccagggtctacctggacctcctggcccccctggtgag
ggaggcaagcctggagaccagggagttcctggagaggctggagctgccggtgctactgga
cccagaggagagcgcggtttccccggagagagaggagctgccggctctcaaggtctgcag
ggaccccgaggtctgcctggaactcctggaactgacggacccaagggagccattggacct
gctggtggccccggagctcagggaccccccggcctgcagggtatgcctggagagagagga
gctgctggcattcctggacccaaaggagacagaggtgacattggggagaaaggacctgag
ggtgcttctggcaaagacggagctagaggtctgacaggtcccattggtcctcctggtcct
agtggtcccaacggcgagaagggtgaatcaggtcctgctggtccttctggagctcctggt
acccgcggtgcgcctggtgacaggggtgagactggacctcctgggcctgctggatttgct
ggaccccctggtgctgacggtcagcctggtaccaagggagagcagggagaacctggacag
aagggtgatgctggtgcccctggaccccaaggaccctctggagctcctggacctgcaggt
cctacaggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggtgccact
ggtttccctggagctgctggccgagttggaccccctggtcccaatggtaatcctggacct
gctggtcctgctggccctgctggtaaagatggaccaaagggtgtgaggggagatggtggt
cccccaggcagacagggtgatgctggactccgtggtccagctggagctcctggagagaag
ggagatcctggagaggatggcccccctggtcccctcggtccttcaggtcctcagggtttg
gctggtcagcgcggtattgttggtctgcctggacagcgtggtgagagaggtttccctggt
ctgcctggaccttctggtgagcccggaaagcagggagctcctggtggcagcggagaccgc
ggaccccctggacctgttggaccacctggacttactggacctgcaggagagcctggcaga
gagggcaaccctggatctgatggacctcctggtagagatggtgctactggaataaagggt
gatattggtaacactggtcctgctggtgctcctggtgctcctggttctccaggtgctccc
ggccccgttggccccactggcaaacagggagaccgaggagagtctggtgcacagggacct
gctggacctccaggacctgctggagccagaggaatgcctggacctcaaggaccccgcggt
gacaagggtgaggctggagagtccggtgagagaggacagaagggacacagaggcttcact
ggtctgcagggtctgcctggacctccgggtcaagctggagaccagggtgctactggacct
gctggaccttctggacaaagaggaccacctggacctgttggccctgctggaaaggatggt
ggaaatggtctgccaggacccattggaccccccggacctcgtggtcgcagtggagagacc
ggcccctctggtccccccggaaaccctggaccccccggtcctcctggtccccctggccct
ggcattgacatgtccgccttcgctggtctgggtacgattgaaaagtcccccgatcctctc
aggtacatgagagctgaccaggcttccggaaacctccgtcagcatgatgctgaggtcgac
gcaacgctcaaatctctcaacaaccagattgagaacatccgcagccccgagggatccagg
aagaacccagctcgcacctgcagagacctgaagctgtgccatcctgactggaagagcgga
gagtactggattgatcctaatcagggctgcaccgtcgatgcaatcaaggtcttctgcaac
atggagacaggagagtcctgcgtcctccccaaaccttccaccatccctcgcaagaactgg
tggtccagcaagagcaaggaacgcaaacatatctggttcggagagacaatgaatggagga
ttccacttcagctatggtgatgacacccttgcacccaacactgctgccattcagatgact
ttcctgaggctgctgtctaccgaggcttctcaaaacctcacctaccactgtaagaacagt
gtggcctacatggacgcctcaatggccaacctaaagaaggccgtgctgctgcagggctcc
aatgatgtggagattagagccgagggcaacagccgcttcacttacagtgtgatggaggac
ggctgcacgaaacacacgggacagtggggcaagacagtgatcgaatacagatcacagaag
acctctcgtctgcccatcgtggacattgcccccatggatattggtggagcagaccaggag
ttcggagttgaagttggggcagtctgcttcttgtaa
DBGET
integrated database retrieval system
