Micropterus salmoides (largemouth bass): 119886172
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Entry
119886172 CDS
T07309
Symbol
alyref
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03013
Nucleocytoplasmic transport
msam03015
mRNA surveillance pathway
msam03040
Spliceosome
msam05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119886172 (alyref)
09122 Translation
03013 Nucleocytoplasmic transport
119886172 (alyref)
03015 mRNA surveillance pathway
119886172 (alyref)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119886172 (alyref)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119886172 (alyref)
03041 Spliceosome [BR:
msam03041
]
119886172 (alyref)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119886172 (alyref)
TREX complex
119886172 (alyref)
Spliceosome [BR:
msam03041
]
Complex C
Other components
EJC/TREX
119886172 (alyref)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119886172 (alyref)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
119886172
NCBI-ProteinID:
XP_038552660
LinkDB
All DBs
Position
Unknown
AA seq
273 aa
AA seq
DB search
MADKMDMSLDDIIKQNRQQRGGGRGGRGRGRGGSGGGGRGGGGAGRVGVGSGGFGGRGGG
SGPMRSRQNLNRGRGRPTPYSRPKQLPDKWQHDMFDNGFSGFNGAAGGGGGAGVETGGKL
LVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQYNG
IPLDGRPMNIQLVTSQIDTQRRPMQGLNRGGGGMNRNRGGGFGGMQRGRGGRGAGGGARG
RGRGGRGGSNKQQLSAEELDAQLDAYNARMDTS
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaaatggatatgtctctagacgacattatcaagcagaacaggcagcagaga
ggtggaggccggggtggaagaggtcgaggccgtggaggctcaggcggcggcggccgggga
ggaggaggcgccgggcgtgttggagtcggcagcggaggatttggaggccgaggtggcgga
tccggccccatgaggagccgacagaacctgaaccgcggtagaggcagaccaacgccttac
agcaggcctaaacagcttccagataagtggcagcacgacatgtttgacaatggcttcagt
ggcttcaatggcgctgctggaggcggtggtggagctggtgtggaaaccggagggaagctc
cttgtctccaaccttgactttggggtctcagacgcagacattcaggaactttttgctgaa
tttgggactctgaaaaaggcggcagtccattacgaccgatcaggaagaagcctgggaacc
gcagatgtccactttgaaaggagggcagatgcactaaaggccatgaagcagtacaatggc
atcccacttgatgggcggcctatgaacatacagctcgtcacgtcacagattgacacacag
aggcgacctatgcaaggtctcaacagaggaggtggaggcatgaacagaaatcgcgggggc
ggctttggggggatgcagagaggccgcggaggacgtggtgcaggaggtggtgccagagga
agggggcgaggtgggcgaggcggtagtaataagcagcagctgtcagcagaagaactcgac
gcccagttagacgcctacaatgccaggatggacactagctaa
DBGET
integrated database retrieval system
