Micropterus salmoides (largemouth bass): 119886176
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Entry
119886176 CDS
T07309
Symbol
pdzrn3b
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase PDZRN3-B
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msam04121
]
119886176 (pdzrn3b)
Enzymes [BR:
msam01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119886176 (pdzrn3b)
Ubiquitin system [BR:
msam04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
119886176 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-TRAF
Sina_ZnF
PDZ_Tricorn
Prok-RING_4
zf-rbx1
U-box
zf-RING_6
RING_XB3-XBAT31
TRAF2_zf
Motif
Other DBs
NCBI-GeneID:
119886176
NCBI-ProteinID:
XP_038552664
LinkDB
All DBs
Position
Unknown
AA seq
1050 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPXKCQRIS
AKELNHVLPLKNLILKLEIKCDNHARGCDAVVKLQHLAEHAEMCEYSPAKCRNKGCNEVL
NLRDMDAHMRETCDYRPVGMCENGCGLMLTHKEQTLNSHCCLIALKAHNSSLQCKIVSLD
REFKKQTIKANKREKSLLAQLSAVHSELQMTALKYQKKFTEYSERIDSLTKTVAFSCKEG
ETKSATVVLLREGGSLGFNIIGGRPCADDNDSTSNEGIFVSKIIERGPADKEEGLQIHDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRTPHPKLVSPAADSQVSDISTQTDIT
LQHIMALTKLPPSSPPMTELEEYLLPEEHPPGHAYFDPNDFLEGIQQDIEREELEYEEVD
LYRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGVEIQNR
EDAVALLTSEGNQNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTTASNTLG
SCRKLTYSQDTLGSTDLPFSSESFISADYADTDFLGIPADECERFRELLELKCQMRNSGA
QSLYYQGGGAEGQDQEGVDKELELLNEELRTIELECLNIVRAHKMQLLREQCRESWMLHN
SGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGA
ENQGPAGASGSTSSIGRMLKPLLSPVQEACGPSRSRGSTKDLDGTVQAESKEGKLGESSK
SGRSFSQPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPITSNDLG
PKMEWKVKIRSDGTRYITKRPVRDKLLRERALRIHEERSGMTTDDDAISELKMGRYWSKE
ERKQHAVRAKEQRQRREFMKQSRADCLKEQAGPEDKKEPNIIELSHKKMMKKRNKKIFDN
WMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgcttcaagggcaccgtggacccggatttcaaatgcaacttg
tgcaacaaagtcctggaggacccgctgacaactccgtgcggtcacgtcttctgctccggc
tgcgtgctgccctgggtcgtccagcagagcagctgcccgntcaaatgtcaacggatctcc
gccaaagagctgaaccacgtcctgcctcttaaaaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgaggggctgcgatgcggtggtgaagctgcagcatctggccgagcat
gccgagatgtgcgagtactccccggcgaagtgcaggaataaaggatgcaacgaggtgctc
aacctgagggacatggatgctcatatgcgggagacgtgcgactacaggccggtggggatg
tgcgagaacggctgtggactgatgctcacccataaagagcagacattaaacagccactgc
tgcctgattgctctgaaggcgcacaacagctctctacagtgcaaaatcgtcagcctggat
agagagttcaagaagcagactattaaagccaacaagcgggagaagtcactcctggcacaa
ctttccgccgtgcacagcgagctacagatgacagctctgaaatatcagaagaaattcacc
gagtatagcgagaggatcgactccctcaccaagaccgtggctttctcctgcaaggaaggc
gagactaaaagtgcgacggttgtccttcttcgtgagggcggatctctgggttttaacatc
ataggaggaaggccatgcgcggacgacaatgacagcacttcgaatgaggggatctttgta
tccaagatcattgaaagaggtccagcggacaaggaagaaggccttcaaatccatgacaga
ataatagaggtcaacggcaaggacctctccaaggccacccacgaccaagcggtggaggcc
ttccgcaccgccaaggagcccatcatggtccaggttctgcgccgtacaccgcatcccaaa
ttggtcagcccggcagctgactcccaggtctcagacatcagcacccagaccgacatcacc
ctccagcacatcatggcccttacaaagctgcctccctcttcaccccccatgacggagctg
gaggagtatctgcttccagaggagcatcctccaggacatgcatactttgaccccaatgac
ttcctggagggcatacagcaggacatagagcgtgaggagctggaatatgaggaagtggat
ttgtaccgagccaatatccaagacaagcttggcctgacgatctgttacaggaccgatgac
gaggatgaagctgggatttacattagtgagattgatccaaacagcattgctgcaaaggat
ggcagaattagagaaggggacaaaatcattcagatcaatggtgttgagatccagaaccga
gaggatgctgttgcgctgctgaccagtgaggggaaccagaatatctctctgctggtggcc
agaccagagatccagctggatgagggctggatggatgatgacaggaacgacttcctggat
gacctccacatggacatgctggagcagcagcaccatcaggccatgcagttcaccgccagc
atgctgcagcagaagaagcatgaggaggacggaggcaccacagacacagccacacttctg
tccaaccaccacgagaaggacagcggggttgggcgcacggatgagagtacgcggaacgac
gagagctcggagcaggagaacctcggcgacgaccagaccacggcctccaacacgctgggc
agctgcagaaagctgacctacagccaggacaccctcggcagcaccgacctgcccttcagc
agcgagtcattcatctctgcagactacgctgacactgactttctgggcatcccggcggat
gagtgcgagcgcttcagagaactcctggagctgaagtgccagatgaggaacagtggagcc
cagagtctgtactaccagggtggtggggcagaaggtcaggaccaggagggcgtagacaaa
gagctggagctgcttaacgaggagctgcgcaccatcgagctggagtgcctgaatatagtc
cgtgctcacaagatgcagctcctgagggagcagtgccgcgagtcctggatgctccacaac
agtggcttccgcaactacaataccagcatcgatgcacggcgccatgagctgtccgacatc
acagagctgccagaaaagtcagacaaagacagctccagtgcctacaacactggcgagagc
tgccgcagcacccctctcacgttggagctgtccccagacaactcgctccgtcgaggagca
gagaatcagggtccggctggggcgtccggctccaccagctccattggcaggatgctcaaa
ccgctcctgtctcctgtccaggaagcctgtggccccagccggagcagaggctccaccaag
gatctagatggaaccgtgcaggcggagagcaaggaggggaagctgggagagtccagtaag
tccgggcggagcttttcccagccacattcaccttacaagcacgcccacatccccgcccac
gcccagcactaccagagctacatgcagctgatccagcagaaatcagccgtggagtatgcc
cagagccagatgagtctggtcagcatgtgccgggaccccatcacctccaacgacctgggg
ccgaagatggagtggaaggtgaagatccgcagcgacggcacacgctacatcaccaagcgg
cctgtccgggacaagctgctgagggagcgtgccctgcgcattcacgaggagcgcagcggt
atgaccacggatgatgacgccataagtgagctgaagatgggccgctactggagcaaggag
gagaggaagcagcatgccgttcgcgccaaagagcagaggcagcgtcgcgagttcatgaag
cagagccgagccgattgtctgaaggagcaggccggcccagaggacaaaaaggagcccaac
atcatcgaactcagccacaaaaagatgatgaaaaagaggaataagaaaatatttgacaac
tggatgaccatccaggaactgctgacccacggtaccaagtcaccagatggcacaagggtt
tacaactcactcttgtctgtgaccacagtctaa
DBGET
integrated database retrieval system
