Micropterus salmoides (largemouth bass): 119886874
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Entry
119886874 CDS
T07309
Name
(RefSeq) dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04010
MAPK signaling pathway
msam04020
Calcium signaling pathway
msam04260
Cardiac muscle contraction
msam04261
Adrenergic signaling in cardiomyocytes
msam04270
Vascular smooth muscle contraction
msam04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119886874
04020 Calcium signaling pathway
119886874
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
119886874
09153 Circulatory system
04260 Cardiac muscle contraction
119886874
04261 Adrenergic signaling in cardiomyocytes
119886874
04270 Vascular smooth muscle contraction
119886874
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
msam04040
]
119886874
Ion channels [BR:
msam04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
119886874
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
119886874
NCBI-ProteinID:
XP_038553772
LinkDB
All DBs
Position
Unknown
AA seq
1479 aa
AA seq
DB search
MADNSSPPLTSYIMDEETLKRKQKEKLKKLMATGGNPRPARSLLFLTLRNPFRKACISIV
EWKPFEIIILLAIFANCVALAVYLPMPEEDTNNTNSNLESLEYIFLIIFSIECFLKIVAY
GFLFHADAYLRNCWNILDFVCVSVGLFTVAMDAINHISGVEAPVGEKGGFDMKALRAFRV
LRPLRLVSGVPSLQVVMNSILKSMLPLFHITLLVLFMVTIYSIMGLELFKCKMHKTCYYT
GTNIIATVEKEKPAPCAQAGNGRRCTINGTECRAGWPGPNQGITHFDNLGFSMLTVYQCI
TTQGWTDVLYWVNDAIGMEWPWIYFTTLILVGSFFVLNLVLGVLSGEFTKEREKAKSRGE
FQKLRETQQLDEDLKGYMEWITQAEVMDNDQEGQEGLLTAENGGSETGSVSKMDTMQLII
YYYKLARKWNRWLRRKCRAYVKSRLFYWWVIMLVLFNTLAIATEHHKQSQRLTNWQDNAN
KLLLSMFALEMFMKMYALGLPSYFISLFNRFDCFVVSTGITELILVRMGVMSVMGISVLR
CIRLLRLLKVTRYWTSLSNLVVSLLNSVRSIACLLLLLFLFIVIFSLLGMQVFGGKFNFP
NQPKPRSTFDSFPQALITVFQILTGEDWNAVMYDGIMAHGGPSMPGILVSIYFIILFVCG
NFILLNVFLAIAVDNLAEAESLTLAQKEKAEEIKRKKALRANMPDKASEEKANLAKKLAE
QRAKGVEGIPTTAKLKIDEFESNVNEIKDPFPPADFPGDDEEEDPEIPESPRPRPMADLQ
LKEEAVPMPEASSFFIFGPQNKFRKLCHRIINATTFTNIILLFILLSSVSLAAEDPIDPM
SFRNQVLAYADIVFTSVFTAEIVLKMTTYGAILHKGSFCRNSFNILDLLVVSVSLLSMGM
ESSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAVKTIGNIVLVTMLLDFMFACI
GVQLFKGKFYACTDPDKVTEDTCKGWYIKYQEGALHEVEVQRREWTNSELNFDNILNGML
ALFTISTFEGWPKILYKAIDSNLEDKGPVYNNRVAISIFFIIYLILIAFFMMNIFVGFVI
VTFQEQGEQEYKNCELDKNQRQCVQYALKARPLRCYIPKNPYQYQVWYIVTSCYFEYLMF
LLIMLNTMCLGMQHCNQSDHVTHLSDMLNVIFTVLFTVEMILKLMAFKAKGYFGDPWNVF
DFVIVIGSVVDVMLSEIDAALASSGGLYCLHGCAAVDPMQAIASSENMSVSVTFFRLFRV
MRLVKLLNRSEGIRNLLWTFIKSLQALPYVALLILMLFFIYAVVGMQIFGKIALVDGTYI
NRNNNFQTFPQAVLLLFRCATGEAWHEVMLACMYGKRCDPKSDYLPGEEYTCGSNFAIIY
FMSFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPQHLDEFKKIWAEYDPEATGRIKHL
DVVTLLRRIPPPLGFGKFCPHRIACKVRKMFSLMSDECF
NT seq
4440 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaacagcagtcccccattgacatcctacatcatggatgaggaaactctgaag
agaaaacagaaggagaagctaaagaagctgatggcaacaggaggcaacccaaggcctgcg
cgctctctgctgttcttgacgctgaggaatcctttccgcaaggcatgcatcagtattgtg
gagtggaaaccttttgaaataataatcctgctggccatctttgccaactgtgtcgccctg
gctgtgtacctgcccatgcctgaggaagataccaacaacaccaacagcaacttggaaagc
ctggagtacatcttcctcatcatcttctctatcgagtgtttcctgaagattgtggcctat
ggatttctctttcatgcagatgcatacttaaggaactgctggaacattttggactttgtg
tgtgtatctgttggcctgttcactgtggctatggatgctatcaaccacatcagtggagtg
gaggctccggtaggagaaaaaggtggcttcgatatgaaagctctgcgggcgttcagagtc
ctccgcccgctcagactggtctctggagtccccagcctgcaagtggtgatgaactccatc
ctgaagtccatgctgcctctttttcacattaccctgctggtccttttcatggtcaccatt
tactccataatgggactggagctcttcaagtgcaaaatgcacaagacctgctactacaca
ggaacaaacatcattgctacggtggagaaggaaaagccggctccatgtgcccaagcagga
aatggtcgccgctgtaccatcaatggcacagagtgtcgagctggctggcctggcccgaac
caaggaatcacccactttgacaacctgggcttttccatgctgactgtctaccagtgtatc
accacacaaggctggaccgatgtcctctactgggttaatgatgctataggaatggaatgg
ccatggatctatttcaccactcttatcctggttggctccttcttcgtgcttaacctggtt
ctgggtgtgctcagtggtgagttcacaaaagagcgggagaaggccaagtcccgtggagag
tttcagaagctgagggagactcagcagctggatgaagacctcaagggctatatggagtgg
atcactcaggctgaggttatggacaatgaccaagagggacaggagggcctgctcactgcg
gaaaatggaggatcagagaccggaagtgtcagcaaaatggacacaatgcagctgatcatc
tattactataaactggctcgaaagtggaatcgctggttacgccgtaaatgcagagcatat
gtgaagtccagactattctactggtgggtgatcatgctcgtcctctttaatacactggcc
atcgcaacggaacaccacaagcagtctcagagactgaccaactggcaagacaatgccaat
aagctgctgctgtctatgtttgccctcgagatgttcatgaagatgtatgctctaggcttg
ccgtcttacttcatatctctcttcaatcgctttgactgctttgtggtgtccactggcatt
acggagctcatcctagtccgcatgggcgtcatgtcagtcatgggcatctctgtgctgcgc
tgcatacgcctgcttcgcctgctcaaagtcaccaggtactggacatctctcagcaatctg
gtggtttccctcttaaactcggtccgttccattgcctgcttgctgctgctgctcttcctt
ttcattgtcatcttctccctgctgggtatgcaggtgtttggagggaagttcaacttccca
aaccaacccaaaccgcgcagcacctttgacagcttcccacaggccctcatcacagtgttc
cagatcctgacaggtgaggactggaatgctgtcatgtatgatggcatcatggctcatgga
ggacccagcatgcctgggatcctagtcagcatctacttcatcatcctctttgtctgtgga
aatttcatccttctgaatgtcttcctggccattgctgttgataatttggcagaggctgag
tctctgactttggcacagaaagagaaggcagaggagataaaacgcaagaaagcactcagg
gccaacatgcctgacaaggcgtcagaggagaaagcaaatctggcaaagaagttggctgag
caaagggccaagggtgtagagggcatccctactactgccaagcttaaaatcgacgagttt
gagtctaacgttaatgagatcaaagaccctttccctccagcagactttcctggtgatgat
gaagaggaggaccctgagatcccagaaagccccagacctcgtccaatggcagatctgcag
ttaaaggaggaagcggtgccaatgccagaagccagctcattttttatctttggacctcag
aacaagttccggaagctctgccatcgtattatcaatgcaactactttcaccaacatcatc
ctcctcttcatcttactgtcatctgtttctttggctgctgaggatcccatcgaccccatg
tccttcaggaaccaggtgttggcctatgctgatatagtcttcacttcagtgttcacagcg
gaaattgtgctcaagatgacaacatacggtgccattcttcacaaagggtctttctgccgg
aactctttcaacatattggatcttctggtggtcagtgtatctctcctgtcgatgggcatg
gaatccagtgccatctcagtggtgaagattttaagggtgttaagggtgctccggcccctg
agggccatcaacagagccaagggactcaagcatgtggtccagtgtgtatttgttgctgtc
aagaccattggaaatattgtgctggtcaccatgctactggacttcatgtttgcctgcatt
ggagtccaacttttcaaaggcaaattctatgcctgcacagatcctgataaagtgactgag
gacacatgcaaaggctggtatataaagtaccaggaaggagcacttcatgaggtggaggtc
cagaggagggaatggaccaactcagagctaaattttgacaacatccttaatggcatgctg
gctctcttcaccatttctacgtttgaaggctggccaaagatactttataaagccattgat
tcaaacttagaggataaagggccagtgtacaacaaccgagtggccatctcaatcttcttt
atcatctacctcatccttattgccttcttcatgatgaacatttttgtgggcttcgtcatc
gtcaccttccaggagcaaggagagcaagaatataagaactgtgagctggacaaaaaccag
cgccagtgtgtgcagtatgctcttaaggcccgacctctgcgatgttatattccaaagaac
ccctaccagtatcaggtgtggtacatcgtcacctcctgctactttgagtaccttatgttc
cttcttattatgctcaacaccatgtgtctgggaatgcagcactgtaaccagtcagaccat
gttactcacctgtcggatatgctgaacgtgatattcactgtgctcttcactgtggagatg
atcctcaaactcatggctttcaaagccaagggttattttggagacccctggaacgtcttt
gactttgtcatcgtcattggaagtgttgtggacgtgatgctgagcgaaattgatgcagca
ctggcctcctctggaggactttactgtctccatggctgcgctgcagtggatcccatgcag
gctatcgcgtcttcggagaacatgagtgtgtcagtcaccttcttcagactgtttcgtgtc
atgcgtctggtgaaacttttgaatcgctctgaagggatacggaatcttctgtggaccttc
atcaaatcccttcaggctcttccctatgtggccctgcttattctcatgctgttctttata
tacgctgtggttggaatgcagatatttggtaaaattgcactggttgacggcacatacatc
aacagaaacaacaacttccagacattcccacaggctgtgctgctgttattcaggtgtgca
acaggggaggcatggcatgaagtgatgttagcgtgtatgtacgggaagaggtgtgacccc
aagtctgactacctgcctggggaggagtacacctgtggatccaactttgccatcatctac
ttcatgagtttctacatgctctgtgcctttctgatcatcaacctgtttgtggctgtcatc
atggataactttgactacttgacacgtgattggtccattcttggcccccagcatttggat
gagttcaagaaaatatgggcagaatacgatcccgaggccacggggcgcattaagcacctt
gatgtggtaacactactacggagaatacctcctcctctgggttttggcaagttttgtcct
catcgtatagcctgcaaggtgagaaaaatgttcagcctgatgtctgatgaatgtttctga
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integrated database retrieval system
