Micropterus salmoides (largemouth bass): 119888321
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Entry
119888321 CDS
T07309
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03008
Ribosome biogenesis in eukaryotes
msam03013
Nucleocytoplasmic transport
msam03015
mRNA surveillance pathway
msam05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119888321 (nxf1a)
03015 mRNA surveillance pathway
119888321 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
119888321 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119888321 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119888321 (nxf1a)
03009 Ribosome biogenesis [BR:
msam03009
]
119888321 (nxf1a)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119888321 (nxf1a)
mRNA cycle factors
Stress granule specific factors
119888321 (nxf1a)
Ribosome biogenesis [BR:
msam03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
119888321 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_4
LRR_8
LRR_9
LRR_6
DUF3592
Motif
Other DBs
NCBI-GeneID:
119888321
NCBI-ProteinID:
XP_038554772
LinkDB
All DBs
Position
Unknown
AA seq
702 aa
AA seq
DB search
MLTDNGSSLKLIAIYCSSLRQRVKCVSMDHVTFCQRSYPNLAVVARVVNDEHGDFMVRRE
VRSTGFMVLGEHDDRTAPQFRNRKGRGSHKGRSYDRSRRDRQRGSHAGGFGGPGPRSRLD
DPDGDVTMSDNSQDNSSQHRFNPYGRPFRKGGDGRFDRDRRQGKGGGGRGGGGGGGGGSF
RGGDRGGGGNNGGGRNRSGWYKITIPHGRKYDKKWLLTALQNICSVPYTPVQYHVDHNRV
HFYVDDSSAANALHKCSHKITDTDGYKVEVHVNPSAPPSFLLSDLKPEHLDHLKQCMAKR
FDGSQQALDLNNIRTDPDLVSQNIEVILNRKTNMEAVIKIIEENIPELMCLNLSNNRIHK
LDELAELVTKVPHLKTLNLSHNELKSDRELEKVKGLKLVELWLNRNPLCDLFKDQASYIS
AVRQRFPRLLKLDGHDLPPPIGFDVETPTTIPPCKGSCFGTDEIKALILRFLQQYYSIYD
SGDRQPLLDAYHDGASLSLTTPYSTQNPSRSSLGEYHKDSRNLKRLKDSTMRFRLLKHTR
LNVVAFLNELPKTQHDIASFTVDVNTYTNTLLSFTVSGVFKEVAVDGKSRESTMSFSRVF
ITVPAGTTGLCIVNDQLFIRMATTEEIRRAFVAPAPTPSSSPVPTLTAPQQEMLTAFSLT
SGMNLEWSQKCLQDNEWDFNRAAQIFTQLKTEGKIPDVAFIK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgctaacagataacggtagctcgctaaagctaatcgcaatttactgctcatctctgagg
cagagagtgaagtgtgtctcgatggaccatgtgactttctgtcagaggagctaccccaac
ctggctgtggttgcacgtgtggtgaatgacgaacatggggactttatggtgaggagagag
gtcagaagcactggcttcatggtcctaggagagcatgatgatagaactgcaccacagttt
cgcaatcgtaagggcagaggctctcacaagggtcggtcgtatgaccggtcccgcagagac
cgccaacggggaagccacgcaggaggctttggaggtcctggaccacggtctaggcttgat
gatcctgatggagatgtaactatgagtgataactctcaggacaacagctcccagcacaga
ttcaacccatatggaagaccttttcggaaaggaggagatggacggtttgacagagacagg
cgacaaggcaaagggggaggaggtagaggaggaggaggaggaggaggaggaggcagcttt
agaggaggagatcgaggtggaggaggcaacaatggaggcgggagaaaccggtcaggctgg
tacaaaataacaataccacacggaagaaaatatgataagaaatggttattgacagccctt
cagaacatctgttcagttccctacacacctgtacagtaccacgttgaccataacagggtc
catttctacgtggatgattcgtcagctgccaatgctttgcacaaatgttctcacaagatc
acagacacagacggctataaggtggaagtgcacgtcaaccccagtgctccaccatccttc
ctcctctctgacctgaagcctgaacacttggatcacctgaagcaatgcatggcaaaacgt
tttgatggctcccagcaagcactggacttgaacaacatccgcacagacccagacttggtg
tcccagaacattgaagtcatcttgaataggaagactaacatggaagctgtcatcaagatc
attgaagaaaacattccagagctgatgtgtttgaacctgagtaacaaccgtattcataaa
ctggatgaacttgccgaattggttaccaaggtgcctcatctgaagaccctcaacctttcc
cacaatgagctgaagtcagaccgggagctggaaaaggtgaaaggcctgaagctggtggag
ctgtggctgaacaggaaccctctgtgcgaccttttcaaggatcaggcctcatacatcagt
gctgtgcggcagaggtttccccggcttctcaaactggatggtcacgacctcccccctccc
attggatttgatgtggagacgcccaccactatccccccctgcaagggcagctgttttggc
actgatgaaatcaaggctctcatccttcggttcttgcaacagtactacagtatatatgac
tcgggggacagacagccactcctggatgcttaccacgatggagcatcgttatccctcaca
acaccttactccacccagaacccctccaggagcagtctgggagagtaccataaagacagt
cgaaacctgaagaggctcaaagactctacgatgcggtttcggcttctgaagcacacacga
ctgaacgtggtggctttcctcaatgagttgcccaaaactcagcacgacattgcttcgttt
actgtcgatgtaaacacctacaccaacacactattgtcattcacagtgagcggagtcttc
aaagaagttgctgttgatggtaaatcccgagagtccaccatgtccttctctcgagtgttc
atcacagtcccagcagggactactgggttgtgcatcgtgaacgaccagcttttcatccgg
atggccacaacggaggagatccgccgagccttcgttgctccagccccgactccatcgtcc
agccctgtccccactctcactgcaccgcagcaggagatgctcacagccttctcattgacg
tctggcatgaacctggaatggtcccaaaagtgtctacaagacaacgagtgggatttcaac
agagcggcacaaatattcactcagttaaagacggaaggcaagatcccagacgttgcgttc
ataaaatga
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