Micropterus salmoides (largemouth bass): 119888329
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Entry
119888329 CDS
T07309
Symbol
abca1b
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam02010
ABC transporters
msam04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
119888329 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
119888329 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
msam02000
]
119888329 (abca1b)
Transporters [BR:
msam02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
119888329 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
Motif
Other DBs
NCBI-GeneID:
119888329
NCBI-ProteinID:
XP_038554787
LinkDB
All DBs
Position
Unknown
AA seq
2333 aa
AA seq
DB search
MLMKEGRGAPECPRLKNNTDAERAADSHTGGETAAAGMSVSTQLGLLLWKNFTYRRRQTL
QLLVEIVWPLFIFFILIAVRLNYPPYEQHECHFPNKAMPSAGTLPWLQGILCNANNPCFR
NPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDKNLDGFKELTQALQALQQSRSGFQ
LKHFLRDEETLSSFLLRNASFSERHTQQIRDADINLEKVLLKGFGVHLRDMCPRKGGKGR
LEDFVTISDQQLATLVQEAICQAPPTWLNHAEEHFLNNLDFFKPLRRDVKSDPQAVQQVV
RATNSLLDSLGSLAVELASMKSWVDLRNEIIFLTQNATSSPSTMYQAVSRIVCGHPEGGG
LQIKSLNWYEDSNYKALFGNHNSSEDEPAALYDNSSTPYCNSLVKNMDSNPMSRMIWQAL
KPLLMGKILYTPHNPATQRVIHEVNRTFQELGVFRDLGGMWEELRPKVWDFMENSEQMDV
IRTLLKNNITASFFHAQLADTDWTVADVSNFLAKQAENPRSAGGTVTWRDVFNETDQAIM
SISRFMECVNLDKLEPVSTEERLVNQSMLLLEDRKFWAGIVFPDIDPNATELPAKLNYKI
RMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFSYLQDVIEQGIIRAMTGTKEKTG
VYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIILKSVVYEKEARLKETMRIMGL
NNGILWFSWFISSLIPLLISAGLLVLLLKMGNLLPYSDPGVVFLFMASFAVVTIMQCFLL
STAFARANLAAACGGILYFTLYLPYVLCVAWQDYIGFGAKVFASLLSPVAFGFGCEYFAL
FEEQGVGIQWKNLVSSPLEEDDFSLRTAIIMMYVDSFLYGVLTWYLEAVFPGQYGIPRPW
FFPFTKSYWSGEKEGRSTNVPLSRKGNPEAVCIEEEPAHLEPGVYIENLVKVYRHGKKLA
VDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGRDIRTDLSAIRQSL
GVCPQHNVLFSMLTVEEHIWFYGRLKGLSEEQVKSEIEQILQDTGLPHKRTSRANALSGG
MQRKLSVALAFVGGXKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADI
LGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKKEPEASLSSCRNSTSTVSFTKKEE
ECASVSSSDAGLGSEHESEAAATENGPAASICDVPFAPPGVSLVSGLILCHVPAARLVED
LGHELTYILPYSAAKDGAFVKLFKDLDQKLPDLGISSYGVSDTTLEEIFLKVAEDNGVDT
EVPSDGTLPVRRRRRTHAFGGGDHQSCLRPLTEDDNNDCNESDGDPESRETDWLNCTDGK
GSYQVKGWSLRRQQFVALMWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKY
PSLELQPWMYEDQVTFISDDAPGDANMQKLLNALLDAPGFGTRCMDGHPIPEAPCTLGDE
DWQTPAVPESVQQLFSSGNWTMENPSPACFCSCDGHKKMLPDCPAGAGGLPPPQMNLSAT
DTLQNLTGRNISDYLVKTYAEIIGKSLKNKVWVNEFRYGGFSLGARSTQVLPPANEVDDA
IERVRKIFELQKGAAADRFLDNLSGFINGLDTKNNVKIWFNNKGWHSIGAFINVMNNGIL
RANLPAGSDATKYGISAFNHPLNLTKEQLSQVALVTTSVDVLVSICVIFAMSFVPASFVV
FLIQERVSKAKHMHFISGVQPLLYWVANFTWDMCNYIVPAVLVILIFICFQQNAYVSTTN
LPALALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSISTFVMELFGNN
EIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGENRLRSPLEWDMVGKNLF
AMAVEGVVFFIITVLIQYRFFIKPRPVSKLTKLGAVGEEDEDVARERQRIVHGLGHGDIL
ELRQLTKVFKRKQKPAVDQLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFL
AGKSILREIDEVHQNMGYCPQFDSINELLTGREHLEFYAILRGVPEKEVCDVAEWGIRKL
GLMKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIK
EGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPDL
LPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTSLSHIFSILAKNKVTLRIEDYSVTQTT
LDQVFVNFAKDQSDDYHSKDNSVRRKHVSIEVPTLSSSRGAAEGGGALRESVM
NT seq
7002 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgaaggaaggcagaggagcacccgagtgtccgaggctgaagaacaacaccgac
gccgagagagcggctgacagtcatacgggcggagagacggcggcggcagggatgtctgtc
tccacacagctgggtctgttgctgtggaagaacttcacctacaggcgacggcagacgctt
cagctcctggtggaaatcgtctggccgctcttcatcttcttcatcctcatcgccgtgcgg
ctgaactaccctccgtacgaacagcatgagtgtcattttcccaacaaggcgatgccgtca
gctggcacgctgccgtggcttcagggaatcctctgcaacgccaacaacccctgcttcaga
aacccgacaccgggcgaatcaccgggcgtcgtcggcaacttcaacgactccataatttct
cgcctgttttcggacgctaagaagattctcctgtacagtcagaacgataagaacctggac
ggattcaaggagctgactcaggctctgcaggcgctgcagcagagccgatcaggcttccag
ctgaagcacttcctgcgggacgaggagacgctgtccagcttcctgctgaggaacgcctcc
ttctccgaacgccacactcagcagatccgagacgccgacatcaacctggagaaggtcctc
ctgaaaggtttcggggtccacctgagggacatgtgtcccaggaaggggggcaaggggaga
ctggaggactttgtgacgatctcggaccaacagctggcgacgctggtacaggaagcgatc
tgtcaggccccgcccacctggctgaaccacgccgaggagcacttcctgaacaacctggac
ttcttcaaacccctgcggagggacgtgaagtccgacccccaggccgtccaacaggtcgta
cgggcgaccaacagcctcctggacagtctgggttctctggcagtcgagttggccagtatg
aagagctgggtcgacctgaggaacgagatcatcttcctgacgcagaacgccacgtcgtcg
cccagcaccatgtaccaggcggtctccaggatcgtgtgcggtcaccctgaaggcggcggc
ctgcagatcaaatccctgaactggtacgaggacagcaactacaaggctctgttcggaaac
cacaacagcagcgaggacgagcccgccgcgctctacgacaactcctccactccgtactgt
aacagcctggtgaagaacatggactcgaacccgatgtcccggatgatctggcaggctctg
aagcctctgctgatggggaagatcctgtacaccccccacaaccccgccacccagagggtc
atccacgaggtgaaccggaccttccaggagctcggtgtgttcagggacctgggcgggatg
tgggaggagctgagacccaaagtctgggacttcatggagaacagtgagcagatggacgtg
atcaggacgctcctgaagaacaacatcaccgccagcttcttccacgctcagctggccgac
actgactggaccgtggccgacgtctccaacttcctggccaagcaggcggagaacccccgg
tcggcgggcggcaccgtcacctggagggacgtgttcaacgagacggaccaggccatcatg
agtatctcccgcttcatggagtgtgtgaacctggacaagctggagccggtctccactgag
gagcgactggtcaaccagtccatgctgctgctggaggacaggaagttctgggcggggatc
gtcttcccggacatcgaccccaacgccaccgagctgccggccaaactcaactacaagatc
cgcatggacatcgacaacgtggagcggaccaataagatcaaagacgcgtactgggatcca
ggtcctcgtgctgacccgtttgaggacatgcggtacatctggggcgggttctcatacctg
caggacgttattgagcaaggcatcatcagagcgatgacgggcaccaaggagaagacgggc
gtctacatccagcagatgccgtatccctgctacgtggacgacatcttcctgcgggtgatg
agccgctccatgcctctcttcatgaccctggcctggatgtactcggtggcgatcatcctg
aagagcgtggtgtacgagaaggaggcgaggctgaaggagaccatgaggattatgggactg
aataacggcatcttgtggttcagctggttcatcagcagcctgatccctctgctgatcagc
gccggcctgctggtcctgctgctcaagatggggaacctgctgccctacagcgaccccggc
gtcgtattcctcttcatggcgtctttcgccgtggtgaccatcatgcagtgcttcctgctc
agcacggcgtttgcccgtgctaacctggccgccgcctgcggaggaatcctctacttcacc
ctctacctgccctacgtgctctgcgtcgcctggcaggactacatcggcttcggagccaaa
gtcttcgctagcctcctgtcccccgtggcgttcgggttcggctgcgagtacttcgctttg
ttcgaggagcagggggtcgggatccagtggaagaacttggtgtccagtcctctggaggag
gacgacttcagcctccgcaccgccatcatcatgatgtacgtggactccttcctgtacgga
gtcctcacctggtacctcgaggccgtgtttccaggtcagtacgggatcccccgaccctgg
tttttccccttcaccaagtcctactggtccggagagaaagaggggaggtccaccaacgtc
cctctgagccggaaaggaaacccagaagctgtgtgcatagaggaggagccggcccacctg
gagccgggagtctacatcgagaacctggtcaaggtttatcgtcacggaaagaagctggct
gtggacggactgactctcggcttctacgagggacagatcacctcctttctggggcacaac
ggggccggaaagaccaccaccatgtccatcctgaccgggctgttccccccgacctccggt
accgcctacatcctgggcagagacatccggaccgatctgagcgccatcagacagagtctg
ggagtttgtccacaacacaacgtcctcttcagcatgctgacggtggaggagcacatctgg
ttctacggccggctcaaagggctgtcggaggagcaggtgaaaagtgagatcgagcagatc
ctgcaggacaccgggctgccgcacaaacgcacctccagggccaacgcgctctccggcggc
atgcagaggaagctgtctgtggctctggccttcgtcgggggtncgaaggtcgtgatcctg
gacgagcccacggccggcgtcgacccctacgcccgcagagggatctgggatctgctgctg
aagtacagacaggggcggaccatcatcctgtccacacaccacatggacgaggcggacatc
ctgggagaccggatcgccatcatctcccacggcaagctgtgctgcgtgggctcgtctctg
tacctgaagaaccagctggggacgggctactacctgacgctggtgaagaaggaacccgag
gcgtcgctcagctcctgcaggaactccaccagcaccgtgtccttcaccaagaaggaggag
gagtgcgcctcggtcagcagcagtgacgcaggactcggcagcgaacatgaaagtgaggct
gctgccaccgagaacggccccgcggcatccatctgcgacgtccccttcgccccccccggc
gtgtccctggtctcgggtctgatcctgtgtcacgtccccgccgcccgcctggtggaagac
ctcgggcacgagctgacctacatcctgccgtacagcgccgccaaggacggagccttcgtg
aagctcttcaaagacctggaccagaagctgcccgacctcggcatctccagctacggcgtg
tccgacaccacgctggaggagattttcctgaaagtggctgaagataacggagtcgacact
gaagtgccttcagatggtacgcttcctgttcggaggcggaggaggacgcacgccttcggg
ggaggagaccatcagagctgcctgaggcctttaacggaggacgacaacaacgactgcaac
gagtccgacggagacccggagagccgggagacggactggctgaactgcacggacggtaaa
gggtcgtatcaggtgaaaggctggagtctgaggaggcagcagtttgtggctctgatgtgg
aaacgatttctgtacgctcgccgctcaaggaagggcttcttcgctcagattgttcttcct
gctgtgtttgtgtgcatcgctctggtcttcagtctcatcgtccccccgtttggaaaatac
ccgagtctggagctgcagccctggatgtacgaggaccaggtcaccttcatcagtgacgac
gctcccggagacgccaacatgcagaagttattaaacgctctgctggacgctccgggcttc
gggacgcgctgcatggacggacatcccatcccagaggctccctgtacgttgggcgatgag
gactggcagactcctgccgtcccagaaagcgtccagcagctgttcagctccggaaactgg
accatggagaacccgtctccggcctgtttctgcagctgcgacggccacaagaagatgctg
ccggactgtcctgccggagccggaggactgccccccccccagatgaatctcagcgccacc
gacactctgcagaacctgacaggaagaaacatctccgactacctggtgaaaacctacgca
gagatcatcggcaagagcctgaagaacaaagtctgggtgaacgaattcagatacggaggt
ttttcattgggcgctaggagcactcaggtcctcccaccggccaatgaggtggacgacgcc
atcgaaagagtcagaaagatctttgagttacagaagggagctgctgcagatcgcttcctc
gacaatttgtcgggtttcatcaacgggttggacacgaagaacaacgtcaagatctggttc
aataacaaaggctggcacagcatcggggccttcatcaacgtgatgaacaatggcatcctg
agagcgaacctgcctgcaggcagcgacgccaccaagtacggaatcagcgccttcaaccac
cctctgaacctgaccaaggagcagctgtcccaggtcgcactggtaacaacctctgtggac
gtcctggtgtccatctgtgtgatcttcgccatgtccttcgtcccggccagcttcgtggtc
ttcctcatccaggagcgagtcagcaaagccaaacacatgcatttcatcagcggagtgcag
ccgctgctctactgggtggccaacttcacctgggacatgtgtaactacatcgtcccagca
gtgctggtcatcctcatcttcatctgtttccaacaaaatgcctacgtgtccaccaccaac
ctgccggccctcgccctgctgctgctgctctacgggtggtcgatcactcctctgatgtac
ccggcctccttcttctttaagatccccagcacggcgtacgtcgtcctcaccagcgtcaac
atcctcatcggcatcaacggcagcatctccaccttcgtcatggagctgttcggaaacaat
gagattggaggaatcaacgacatcctgaagaacgtcctcctcatcttcccgcacttctgt
ctcggtcgaggactcatcgacatggtgaagaaccaggcgatggccgacgccctcgagaga
tttggtgagaaccggctgcgctccccgctggagtgggacatggtgggcaagaacctgttt
gcgatggctgtggagggagtggtcttcttcatcatcactgtcctcatccagtacaggttc
ttcatcaaacccaggcccgtcagtaaactcaccaagctgggagctgtgggtgaggaggac
gaggacgtggcccgagagagacagaggatcgtccacggcctcggacacggagacatcctg
gagctccgacagctcaccaaggtgtttaagaggaagcagaagccggcggtggatcagctg
tgtgtcgggattccacctggagagtgcttcgggctgctgggagtgaacggagctggaaag
acgaccacctttaagatgctgacaggagacacgctggtgaccagcggagaggccttcctg
gccgggaagagtatcctgagggagatcgatgaggtacatcagaacatgggttactgtcct
cagtttgattccatcaacgagctgctaacaggaagagaacatctggagttctacgccatc
ctcagaggagtccccgagaaggaagtctgcgacgtggcagagtgggggatcaggaagttg
ggtctaatgaagtatgccgataaagcagcaggaagttacagcggaggaaacatgaggaaa
ctgtccacagccatggctctgattggtgctccacctgtcgtcttcctggacgagcccacg
accggcatggaccccaaagctcgccgagcgctctggaactgcatccacagtgtcatcaag
gagggacgctccgtcgtcctcacctcacacagtatggaggagtgcgaggctctgtgtacc
aggatggccatcatggtgaacggcaggttcagatgtctcggcagcgtccaacacctgaag
aacaggtttggtgacgggtacaccatcatcctgcgggtggcggggcccgaccccgacctg
ctgcccgtcatgaagttcatcgagagcgagctgagcggcagcacgctgaaggagaagcac
aggaacatgcttcagtaccagctgccatcttccctcacctccctctcccacatcttctcc
atcctcgccaaaaataaagtgacgctgaggatcgaggactactcagtcactcagaccacg
ctggaccaggtgtttgtgaactttgctaaggaccagagcgacgactatcactccaaagac
aactcggtgagacggaaacacgtctccatcgaagttcccacgctgagctcgagccgagga
gctgctgagggggggggcgcgctgagggagagcgtcatgtga
DBGET
integrated database retrieval system
