Micropterus salmoides (largemouth bass): 119888346
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Entry
119888346 CDS
T07309
Symbol
cstf2
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 2
KO
K14407
cleavage stimulation factor subunit 2
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119888346 (cstf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119888346 (cstf2)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
119888346 (cstf2)
U7-dependent histone pre-mRNA processing factors
119888346 (cstf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_Rrp7
Motif
Other DBs
NCBI-GeneID:
119888346
NCBI-ProteinID:
XP_038554815
LinkDB
All DBs
Position
Unknown
AA seq
494 aa
AA seq
DB search
MANVAAAAAAAAAAAAAANRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRL
VYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTG
APIIESPYGDSIQPQEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQ
LAYALLQAQVVMRIVDPEIALKMLHRQTPVPPLIPSGQGGGAPPVNPPPAQPSVPVPQPQ
PVPGMHVNGAPPMMQPPNMGVVPGPMPAPGPAPGPGPGQVGPPGPGGIPPRGLLGDGPND
PRGGTLLSVTGEVIEPARSYMGAPPPHQAPPVHMTQMASGPPPDMRGPPMDMRGPPMGEP
RNMMGDPRGPPMMEPRGPPMETRGRDPRGMDARGPVTGQRVPMAAGMQGPVPHSMGPNAP
PPARPGPGISGVPPSGGGFSPGQSQVSTQDQEKAALIMQVLQLTPEQIAMLPPEQRQSIL
ILKEQIQKTAGGAP
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgtagctgccgctgcggctgctgctgccgctgccgccgccgccgcgaataga
gacccagccgttgatcgttcattgcggtctgtgtttgtggggaacattccgtatgaagcc
acagaagaacagctgaaagacatattttcagaagtcgggcttgttgtcagcttcaggtta
gtatatgacagggagacaggaaaaccaaagggatatggcttctgtgaatatcaagaccag
gagacggccctcagtgccatgcggaacctgaacgggagagagttcagtggtcgggctctt
cgtgttgacaatgcagccagtgagaaaaacaaggaagagctcaaaagtttgggaacagga
gcacccattattgagtctccttatggagacagcatccagccacaggaagccccagagtcc
atcagcagagctgtggccagtctgccacctgagcagatgtttgaacttatgaaacaaatg
aagctgtgtgtgcagaacagcccccaggaggcgaggaacatgctgctgcagaaccctcag
ctggcctatgctctgctgcaggcccaagtggtcatgcggattgttgaccctgagatagcc
ttgaaaatgctgcaccgtcagactccagtcccgcctctcattcccagcgggcagggtgga
ggagcaccgcctgtcaatccacctcctgcacagcccagcgtgccagtgcctcagccgcag
cctgtgcctgggatgcatgtcaatggggcccctccgatgatgcagccccccaacatgggt
gttgtccctggaccaatgcctgcaccaggacctgcaccaggaccgggtccaggacaagtg
ggacctccaggaccaggtggtatccctcctaggggcctgctgggagatggtcctaatgat
cccagaggaggaactctgctgtcagtgactggagaggtcatcgaacccgcccgcagctac
atgggcgctccaccaccacaccaagccccacctgtacatatgacccaaatggcaagtgga
ccccctcccgatatgagaggacctccaatggacatgagaggcccacccatgggcgaacca
cgaaacatgatgggtgaccccagagggcccccaatgatggaaccacggggacccccgatg
gaaaccagaggtcgcgacccgagagggatggacgctcgtggtccagtgacaggacagagg
gttcccatggcggcagggatgcaaggccctgttccgcatagcatgggtcccaacgctcct
cctcctgcaagaccgggtcctggtatttctggtgttcctccatcgggaggaggcttcagt
ccggggcagagccaggtctccacacaggaccaggagaaggccgccctgattatgcaggtc
ctgcagctgaccccagaacaaatcgctatgttgccgccggagcagcggcagagcatcctc
atcctcaaagagcagattcagaagacggcaggtggggcaccttga
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