Micropterus salmoides (largemouth bass): 119888484
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Entry
119888484 CDS
T07309
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119888484 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msam03021
]
119888484 (polr1a)
Enzymes [BR:
msam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119888484 (polr1a)
Transcription machinery [BR:
msam03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
119888484 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
CDC45
HMG_box_2
Nop14
DUF7377
Motif
Other DBs
NCBI-GeneID:
119888484
NCBI-ProteinID:
XP_038554975
LinkDB
All DBs
Position
Unknown
AA seq
1694 aa
AA seq
DB search
MLFAKEVPWRRLEGMSFGMYSAEEIRKLSVKAITNFRFLDAVGNVAPNSLYDLALGPADS
KEVCSTCCQDFNNCPGHLGHVDLPLPVYNPLFFDKLYLLIRGSCLACQMLTCPRAAIHLL
LNQLKLVEHGAMQEVYQVEQIINQHLEENPKATGDEIQQVLKTFTDTILGASTEGSKNTK
PIKHLVEKKSSLINDFWKTHMKTRKCPYCGSGRSTVRREHNSKLIVTMPSGVKTSGDTDE
NLMAGKRVYMTASTAREHTNKLWEKEGFFLKCLFSGLEEGTATKEGEKAFYPDLFFLELL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCVIIRKLLALIAGEKTAQEEEAPEQADQ
SFLSGIPGQTLTDKLYNIWVRLQTHVNIVFDSDMDKMMTEKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GASMVINEDGRRTILSPTNLAQREAVAKQLLTPSPGPQKMPMKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAYTLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFNRVQYTELVYRGLTDKPGRVKLLPP
AILKPQELWTGKQVVSTLLLNVIPQKAVPLNLVGKSKIPSKAWIQVPPRAAPGYKPDSMC
DSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANRQRKKIIEESLKIGTKALQAAFNLPSNVDQAEAQSRWQDAHLNP
DQREFSMADHKFKEVANQVNNDINKVCMPIGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKSLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFPFIEDNYEVIKRSQGLDEVLARLDPHTANKHFGAIQRWRAKREVACPRRGAFLLFS
QKKLAKLKQTEEQRTEPQHVHSRRAAALQLVQQWHSLDESSRSKYSRKASRCPEPSLGLL
RPDVCFGSVSENFHDITDKYLQDRGSVNHNSLDANSLRQLLHYKWQRSLCDPGEAVGLLA
AQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNRKAL
KRAKMLRKKLTRVCLAEVLQKVDVVETLRIENHEKLRTFKVTFHFLPPDRYCDDKLLSPD
QILHYMETRFFRLLLEGIKKRSAKLASIAVETRKATLRDKDTVGDGTADTAGVDDGDGEE
EREIVDDQANEGDADASDAKRKDKQEEEVDYESEEDEEEEDGTDDGEDKDQGDEEEGAEE
NAEEPQPETAGVERKKKKRAKRGRGEGEETLNQMRVNSVLESNPAIERYHYDVQHELWCE
VDLVLPVSKVHFDLTSLLSTLAHNAVIMETRGLTRCLLNEATTKTGEKETVLNTEGINMH
EMFKHSDILDINRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVAD
YMCFEGVYKPLNRHAIQSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVV
KGGTGLFELKQPLQ
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttgcaaaagaagtgccatggcggcgcttggagggcatgtcgtttggcatgtat
tctgccgaggagataagaaagttgagcgtgaaggcgatcactaacttcaggttcctcgat
gctgttgggaatgtggccccgaacagcctgtacgatctggccctgggaccagcagacagc
aaagaggtgtgttcgacctgctgtcaggacttcaacaactgtccaggacacctgggacat
gtagacctacctttacctgtatacaacccactgttctttgataaactctacctgttgatt
cgtggttcctgtctggcgtgtcagatgttaacgtgtcctcgagctgccatccacctgctg
ctgaaccagctgaagttagtggagcatggagccatgcaggaggtctaccaagtcgaacaa
attatcaaccagcacctggaggagaatcccaaagccactggagatgagattcagcaggtg
cttaagacgtttacagacacgatactcggagccagcactgaagggtcaaagaacaccaaa
ccgattaaacatcttgttgaaaaaaagagcagtctgataaatgacttctggaagacccac
atgaaaactaggaagtgtccttactgcgggagtggaaggtctacggtgcgccgtgaacac
aacagtaagctgattgtcacaatgccatcaggagtaaaaaccagtggtgatactgatgag
aatctgatggctggaaagagagtctacatgacggccagtactgctagagaacacaccaac
aaactgtgggagaaagaaggtttcttcttgaagtgtctgttctctgggctggaggagggg
acggccacaaaggaaggagagaaggctttctatccagacctcttcttcctggagctactg
gtggtcccaccttgcaggtatcgtcccatcaatcgactgggtgaccagatgtttacaaac
ggccagacagtcaacatgcaggctgtcatgaaggactgtgtaatcataaggaaacttctg
gctctcatagcaggggagaaaactgctcaggaggaagaggctcctgaacaggcggaccag
tcgtttctgtcggggatccccggacagacattaacagataaactctacaacatctgggtg
cgactacagacccacgttaacatcgtctttgacagtgacatggacaaaatgatgacagag
aaatacccaggaatcagacagatcttggagaagaaggacggattgttccggaaacacatg
atgggaaaacgagtggactacgctgcacgatctgtcatctgtccagacatgtacataggg
accaacgagataggaatacctatggtgtttgccaccaagctgacctacccccagcccgtg
actccatggaacgtcaaggagcttcgtcaggccgttctcaatggacccaacgtccacccc
ggtgcctccatggtgataaacgaagacggcaggagaaccatcctatcacctaccaacctc
gcccagagagaagctgttgccaagcaactgcttacacccagtcctggtccacagaagatg
cccatgaagatcgtgaatcgtcacatcaagaacggagacgttttgttactgaacagacag
ccgactctgcacagaccctccatacaggcccactgcgcacggatcttaccaggagagaag
gtactgaggctccactatgccaactgcaaggcgtacaatgctgactttgatggagacgaa
atgaacgcgcacttccctcaaagtgagctgagcagagcagaggcctacacgttagtcagc
actgaccagcagtacctcgtccccaaggacggtaaacctttagcaggtctgatccaggac
cacatggtgtcgggtacgaggatgacgatacggggctgtttcttcaacagagtccagtac
acagagttggtgtacagaggactgactgacaaaccggggagagttaaactgctgccgccg
gccatactcaagccacaggaactgtggacaggaaagcaggtggtgtcgacactcctgctg
aatgttatcccacagaaggccgtgcctctcaacctggtgggcaaatcgaaaatccccagc
aaagcgtggatccaagtcccaccacgggctgctccaggatacaaacctgacagcatgtgt
gactcacaggtggtgattcgtcagggggagctgttggtgggggttctggacaaagctcac
tacggctcctcagcctacggtctggtccactgctgctatgagctgtacggaggggagacc
agtggcaaactgctcagctgtctggctcgactcttcactgcttacctgcagctgtacaga
ggctttactctaggtgtggaagatatcctggtgaaaccgggcgccaacaggcagaggaag
aagatcattgaagaatcactgaagattggcaccaaagccctccaggcagccttcaacctt
ccctccaatgtggatcaagctgaggctcagagccgctggcaggacgctcacctcaaccca
gaccagagagagttcagcatggccgaccacaagttcaaagaagtggccaaccaagtgaac
aatgacattaacaaggtgtgcatgccaattggcctccacacctccttccctgacaacaac
ctccagctgatggtccaatcaggagccaagggatctactgttaacaccatgcagatttcg
tgtctattaggtcagatcgagttggagggccgtaggcctccactaatgccttctgggaaa
tccttgccgtgcttccagccatatgaccccgcacctggtgccgggggcttcgtttctgga
aggttcctcacaggcatcaaaccgcaggagtttttctttcactgtatggctggcagagag
ggactggtcgacacagccgtgaaaacctctagatcaggatacctgcagagatgtgtcata
aagcatctggagggtttggtagtgcagtacgatctgacggtgagggacagcgatggatct
gtggtccagttcctgtacggtgaagacgggctggatatccccaagactcagttcctgcag
ccaagacagttccccttcatagaggacaactatgaggtcatcaagaggtcccagggtctg
gatgaggttttggcacgtttggatcctcacactgctaataaacattttggggccatccag
cgctggagagcaaagagggaggtggcatgtccacgcagaggagcgttcttgcttttttcc
cagaagaagttggccaaactgaaacaaacagaagagcaaagaacagagccacagcatgtc
cacagcagaagggctgctgcactgcagctcgttcagcagtggcactccctggatgaatcc
agcagatcaaaatacagcaggaaggcctcccgttgccctgagccctctctgggcttgtta
aggcctgacgtgtgctttggatcagtatctgaaaactttcacgacatcacagacaagtac
ctgcaggacagaggctcggtgaatcacaacagcctggatgccaacagccttcgccagctt
ctgcactataagtggcagcgctcgctgtgtgatccaggtgaagcagtgggtctgctggca
gcgcagtccataggtgagccctccacccagatgaccctcaacaccttccactttgctggc
agaggagagatgaacgtcactttgggaatacctcgactgagagagatcctgatggtggcc
agctccaacattaaaactcccatgatgagcgttcccgtgctaaacaacaggaaagccttg
aagagagccaagatgctccgtaagaaactcaccagagtctgtctggctgaggtgctgcaa
aaggttgatgttgtagagacattacggatcgaaaatcacgaaaagttgcggacattcaag
gtgacctttcacttcctgcctcctgaccgttactgtgacgataagctgctatcacctgac
cagatcctccactacatggaaactaggtttttccgtcttctcctcgaaggcattaagaag
cgcagcgccaagctggcctccatcgccgttgaaacgaggaaggccacgctcagagataag
gacaccgttggtgatggaaccgctgacacagcaggggtagatgacggggatggagaagag
gagcgagagattgttgatgaccaggcgaacgaaggagacgctgatgcttcagacgccaag
cgcaaagacaaacaggaagaggaggtggactatgagagtgaggaggacgaggaggaggag
gatggaacggatgatggtgaggataaagatcagggtgacgaagaggagggggcggaggag
aacgcggaggagccccagccggagactgcaggagtggagaggaagaagaagaagcgagca
aaaagagggcgaggagaaggagaggagaccctgaatcagatgagagtgaactctgttctg
gaatccaacccggcgatagagagatatcactacgatgtccagcatgaactctggtgtgag
gttgacctggtcttgccggtgagcaaggtgcacttcgacctcacctcacttctgtcaaca
ctggcccacaatgccgtcatcatggagaccagaggcttgacacgctgcctgctgaacgaa
gccaccacaaagactggagagaaagagaccgttctcaacacagaaggcatcaacatgcac
gaaatgttcaagcacagtgacatcttggacatcaacagactgtactccaatgaggtccat
gccatggctaacacctatgggattgaagtggctctgaaggtcatagagaaggagattaaa
gatgtctttgccgtctatggtatcgaggtggaccccagacatctgtcactcgtagcagat
tacatgtgttttgagggtgtatataagcccttaaaccggcatgccatccagtccaactcc
tcccctctgcagcagatgaccttcgagaccagctacaaattcctcaaacaggctaccatg
ctggggtcacacgatcagctggtgtccccctcggcctgcctggtggtggggaaggtagtc
aaaggtggaacaggactgtttgaactgaaacaacctctgcagtag
DBGET
integrated database retrieval system
