KEGG   Micropterus salmoides (largemouth bass): 119888840
Entry
119888840         CDS       T07309                                 
Symbol
syvn1
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase synoviolin
  KO
K10601  E3 ubiquitin-protein ligase synoviolin [EC:2.3.2.27]
Organism
msam  Micropterus salmoides (largemouth bass)
Pathway
msam04120  Ubiquitin mediated proteolysis
msam04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:msam00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    119888840 (syvn1)
   04120 Ubiquitin mediated proteolysis
    119888840 (syvn1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:msam04121]
    119888840 (syvn1)
Enzymes [BR:msam01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     119888840 (syvn1)
Ubiquitin system [BR:msam04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    119888840 (syvn1)
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4 zf-rbx1 zf-C3HC4_2 zf-RING_UBOX zf-C3HC4_3 zf-RING_16 zf-RING_11 zf-RING_5 zf-ANAPC11 zf-RING-like zf-HC5HC2H zf-Nse FANCL_C
Other DBs
NCBI-GeneID: 119888840
NCBI-ProteinID: XP_038555530
LinkDB
Position
Unknown
AA seq 640 aa
MVRAALVTATSLALTGAVVAHAYLLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISCIFHLRVLSLMGLLAVMDFLFVNHACHSIITRGASVQLVFGFEYAI
LLTMVLTTFIKYLLHTIDLQSENPWDNKAVYMLYTELFTGFIKVLLYIAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASNNNQTPAPVRSRPPAPAAPANAP
AAPPANVAPGMLPGFPPGIFPFWGPFPAVPPPAAPAAAPGASDAPRSSTEATQAAGTSQP
TSSTTDAAAAAAAAAAAPGSAIPGFPFSFPPPPFPTAPWLPMPPPPPFVSSMPPPPPSLS
RLSEEELRELEAEGRRGLEARLQCLQNIHTLLDAAMLNIHHYLSTVATLNPPRAGGSAGE
ASGTNNAASSPAAGGSTDSASQEKDSPSSERVEGATVSSQLPDSTSPALDTESKEKMDEG
AVSVGDEDGEPNAAELRRRRLRKLETATSSSASSSPPPDN
NT seq 1923 nt   +upstreamnt  +downstreamnt
atggtacgagcagccttggtgacagccaccagtctggcactgactggggctgtggtggca
catgcttacttgctcaaacaccagttctacccaactgtggtctacctcaccaagagcagc
cccagcatggcggtgttgtacatccaggcctttgttttggtgtttctgctgggaaagttc
atgcggaaggtctttttcggacagctaagggctgcagaaatggagcatctcatcgagcgc
tcctggtacgcagtgacagagacatgcctggcattcactgtgtttagggatgacttctcc
cctcgctttgtcgccctcttcaccctcctgctcttccttaagtgcttccactggctggct
gaggaccgggtggactttatggagcggagtccaaacatatcttgtatttttcacttgaga
gtattatctctcatgggactgctggctgtcatggacttcctgtttgtcaaccatgcgtgt
cacagcatcattacccgaggagcctcagtccagcttgtttttggatttgagtatgccatc
ctgctgaccatggtgctgacgaccttcattaagtaccttctgcacactatcgacctgcag
agtgaaaatccctgggacaacaaggccgtctatatgctctacactgagctcttcacaggt
ttcatcaaagtgctcctgtacattgccttcatgaccatcatgattaaggtccacaccttc
cccctgtttgccattcgccccatgtatctggctatgaggcagttcaagaaagctgtaacg
gatgctataatgtctcggagagccatccgcaacatgaatacactatatcctgatgctact
cctgaagatctgcaggcctctgacaatgtctgtatcatttgtcgagaggaaatggtcacc
ggagccaagaaactaccttgtaatcacattttccattccagctgcctgcgctcctggttc
cagaggcagcagacctgccctacctgtcgcatggacgttctgcgtgcatctaataacaat
cagactccagcccccgttaggtcccgcccccctgctcctgcagcccccgccaacgcccca
gcagccccacctgccaacgtagccccaggaatgttacctgggttccctcctggcatcttc
cccttctgggggcccttccctgcagtgcctcctcctgctgcaccagctgcagctcctggt
gctagtgatgcaccacgaagcagcacagaggccacacaggcagctggtaccagccagccc
acctcatcaactacagacgctgctgcagctgctgcagctgctgctgctgctccgggatca
gcaatcccgggcttccccttctccttcccccctcctcccttccccactgccccatggctc
cccatgccacctcctcctccatttgtgtcatcaatgcctccgcctcctccgtctctgtcc
cggctgtcagaggaggagctgagggagctggaggcagaaggccgaaggggcctcgaggcc
aggctccagtgtctccagaacatccacaccctgctggacgccgccatgctcaacatccac
cactacctcagcacggtggccacactcaatcctcctcgggctgggggcagcgctggagaa
gccagtgggacaaacaacgctgcttcatctcctgcagctggcggcagcacggacagtgcc
agccaggagaaggactctcccagctctgagcgggtcgagggagctacagtctcctctcag
ctacctgactctacttctcctgccttggacacagaaagcaaagaaaagatggacgaagga
gcagtgtctgtgggggacgaggatggagaacccaacgccgcagagctgaggcgccgccgc
cttcgcaagctagagaccgcaacatcgtcgtcagcatcgtcctcaccccctccagacaat
tga

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