Micropterus salmoides (largemouth bass): 119888973
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Entry
119888973 CDS
T07309
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04010
MAPK signaling pathway
msam04210
Apoptosis
msam04218
Cellular senescence
msam04620
Toll-like receptor signaling pathway
msam04621
NOD-like receptor signaling pathway
msam04622
RIG-I-like receptor signaling pathway
msam04623
Cytosolic DNA-sensing pathway
msam04625
C-type lectin receptor signaling pathway
msam04920
Adipocytokine signaling pathway
msam05132
Salmonella infection
msam05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
119888973 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msam03000
]
119888973 (nfkb1)
Transcription factors [BR:
msam03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
119888973 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
119888973
NCBI-ProteinID:
XP_038555720
LinkDB
All DBs
Position
Unknown
AA seq
950 aa
AA seq
DB search
MSVHGEDYLHNTQIFENIMMDPSWDFTHFAAMPQTASLRTVDGPYLQIVEQPKQRGFRFR
YGCEGPSHGGLPGASSEKNRKTYPTVKIINYQGPSRVVVQLVTALTPLPQLHAHSLVGKQ
CDKGICIADLQPKDTNISFPNLGILHVTKKNVAKTLEERMIEAFRMGYNCGVSIHPEIDN
LRGEVRVPRELTDHQRSLISSVASVQAKEMDLSVVRLMFTAFLPDSDGGFSRRLEPVVSE
PIYDSKAPNASNLKIVRMDRTAGCVSGGEEVYLLCDKVQKDDIQVRFYEEDDSGMTWEAL
GDFSPTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKE
EVQRKRQKTLPNFQDFSGHGGGGGGGGGLYRGGGGGGGGPAVGGGPGSAGGGGGGGGGAY
FQGFTTYHYGGGGAGGGGVGGFSTGYSAGLGGGGGIKHASQGDATDGADDDSDPDDDDSE
SGVVLRALSQPRGEEAGESTEEGGGGVESEHGGERLDQVTSRQLEALFQYSVTGDSAYLL
APQRPLMTAQDEDGDTGLHLAVLHSQQEALKSLTQVVSALPGQEVLNMRNHLYQTPLHLA
VITQQREAVEALLLAGADPTLTDRHGNTVLHLASQLEGGGIVKFLLQHRELRELLYHTNT
AGLCAIHLAVLANQLFSLRELLEGGANVEAQERSSGRTALHLATEAENVSLAGCLLLEGN
ANVDCCTFNGSTPLHIAAGRGSIKLTALLMAAGADPHKENFEPLFFRDEECCDEEREDED
EDEGYIPGTTPLNMAATTQVLELLNGKEYEPPQRAAVPPQGDLASLDMEVKQEVCRALES
EGCWENLAHGLGLGILNTAFRLSPSPAKTLLDSYEVSGGTVRDLLAGLRSVGECRALSVL
EEALRHLGDQETQAADETSGEALCAQVQDLKVDVRIDSGVCDSGVELSTA
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtccatggagaagactaccttcataatactcagatttttgagaacataatgatg
gatccatcgtgggactttacacattttgctgcgatgcctcagacggcgtccctgcggaca
gtggacggcccgtacctgcagatcgtggagcagcccaaacagcgtggcttcaggttccgg
tacggttgtgaaggtccgtctcacggcggtctgccgggagcctccagtgagaagaaccgg
aagacctaccccaccgtcaagatcattaactaccagggtccgtcccgggtggtggtgcag
ctggtgacggcgctgacccccctccctcagcttcacgctcacagtctggtgggaaaacag
tgtgacaaagggatctgcatcgccgacctgcagcccaaagacaccaacatcagttttccc
aacctgggcatcctccatgtgacgaagaagaacgtggcgaagactctggaggagaggatg
atcgaggccttcaggatgggatacaactgtggagtctccatccaccccgagatagacaac
ctgcggggggaagtccgggtcccccgagagctcaccgaccaccagcgcagtctgatcagc
agcgtggcgtctgtccaggctaaagaaatggacctcagcgtggttcgactcatgttcacg
gcgttcctccccgacagtgacggcggtttctccagacggctcgagcccgtcgtgtctgaa
ccgatctacgacagcaaggctcccaacgcctccaacctgaagatcgtgaggatggatcga
actgccggctgtgtgagcggaggagaggaggtctacctgctctgtgacaaagtccagaaa
gatgacatccaggttcggttctacgaagaagacgactcggggatgacctgggaggctctg
ggagatttctccccgacagatgttcacagacagttcgccatcgtgttcaagactccaaag
tatcgagaccagaacctgcagaagccgacgtccgtgtttgtccagctgaagaggaagtct
gacaacgagaccagcgagcccaaacccttcacctaccaccctcagatcatagacaaggag
gaggtgcagaggaagagacagaagacgttgccaaactttcaggactttagtggtcatgga
ggaggaggaggaggaggaggaggtctgtaccgaggaggaggaggaggaggaggaggtcct
gctgtaggaggaggacccggctctgcaggaggaggaggaggaggaggaggaggagcttac
ttccagggcttcactacctaccactatggaggaggtggggcgggtggaggcggagttgga
ggcttctccacaggatactcagccggtctggggggaggaggaggcatcaagcacgcctcc
cagggtgacgcaacagacggcgccgacgacgacagcgatccagacgacgacgactcggag
tctggggtcgtcctgagagctttatcccagccgagaggagaggaggcgggggagagtacg
gaggagggaggaggcggtgtggagtcagaacacggaggggagcggttggatcaggtgacc
agcagacagttggaggctctctttcagtactcggttacaggtgattcggcgtacctgttg
gctccacagcgccccctgatgaccgcacaggacgaggatggagacactgggctccatctg
gctgttctccacagccagcaggaggcgctgaagagtctgactcaggttgtctctgccctg
cctggacaggaagtgctcaacatgaggaaccacctctaccagactcctttgcacctggcg
gtgatcacccagcagagggaggcggtggaagcgctgctattggccggcgctgacccgact
ctgacagaccgtcatggcaacacagtgctccacctggcgtcccagctggaaggaggaggg
atagtcaagtttctgcttcagcacagagagctgagggagctgctgtaccacaccaacaca
gcaggtctgtgtgcaatccacctggcagtgctggccaatcagctgttttctctcagagag
ctgctggagggcggggctaacgtggaggctcaggagcgcagcagtggacggaccgccctt
cacctcgccaccgaggccgaaaacgtgtcgctggccggctgcctgctgctggagggaaac
gccaatgtggactgctgcacctttaatggctccacgcctctccacatcgctgcagggcgg
ggctcaatcaagctaacggcgctcctcatggctgcaggcgctgaccctcataaggagaac
tttgagccgctgttcttcagggacgaggagtgctgcgacgaggagagggaggatgaggat
gaagatgaaggctacatcccgggtaccactccgctcaacatggccgccaccactcaggtg
ttggagcttctgaatgggaaagagtacgaacctccacagagagctgctgtccctcctcaa
ggcgacctggcgagcctggacatggaggtgaagcaggaagtgtgtcgtgctctggagagc
gaaggatgctgggagaatctggctcacggtctgggtctcgggatcctcaacacggccttc
agactgagcccctcccccgccaaaacactgctggacagctacgaggtttcaggcgggacg
gtccgggatctgctggccggtctgaggtcagtgggagagtgcagagcgctgagcgtcctg
gaggaggcgctgcgtcacctcggcgaccaggaaacgcaggcggccgacgagacgagcggc
gaggctctgtgcgctcaggtccaggacctgaaggtggacgttcggatcgacagcggggtg
tgtgacagcggggtggagctctccacagcgtaa
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integrated database retrieval system
