Micropterus salmoides (largemouth bass): 119888973
Help
Entry
119888973 CDS
T07309
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04010
MAPK signaling pathway
msam04210
Apoptosis
msam04218
Cellular senescence
msam04620
Toll-like receptor signaling pathway
msam04621
NOD-like receptor signaling pathway
msam04622
RIG-I-like receptor signaling pathway
msam04623
Cytosolic DNA-sensing pathway
msam04625
C-type lectin receptor signaling pathway
msam04920
Adipocytokine signaling pathway
msam05132
Salmonella infection
msam05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119888973 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
119888973 (nfkb1)
04218 Cellular senescence
119888973 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
119888973 (nfkb1)
04621 NOD-like receptor signaling pathway
119888973 (nfkb1)
04622 RIG-I-like receptor signaling pathway
119888973 (nfkb1)
04623 Cytosolic DNA-sensing pathway
119888973 (nfkb1)
04625 C-type lectin receptor signaling pathway
119888973 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
119888973 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119888973 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
119888973 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msam03000
]
119888973 (nfkb1)
Transcription factors [BR:
msam03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
119888973 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
119888973
NCBI-ProteinID:
XP_038555720
LinkDB
All DBs
Position
Unknown
AA seq
950 aa
AA seq
DB search
MSVHGEDYLHNTQIFENIMMDPSWDFTHFAAMPQTASLRTVDGPYLQIVEQPKQRGFRFR
YGCEGPSHGGLPGASSEKNRKTYPTVKIINYQGPSRVVVQLVTALTPLPQLHAHSLVGKQ
CDKGICIADLQPKDTNISFPNLGILHVTKKNVAKTLEERMIEAFRMGYNCGVSIHPEIDN
LRGEVRVPRELTDHQRSLISSVASVQAKEMDLSVVRLMFTAFLPDSDGGFSRRLEPVVSE
PIYDSKAPNASNLKIVRMDRTAGCVSGGEEVYLLCDKVQKDDIQVRFYEEDDSGMTWEAL
GDFSPTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKE
EVQRKRQKTLPNFQDFSGHGGGGGGGGGLYRGGGGGGGGPAVGGGPGSAGGGGGGGGGAY
FQGFTTYHYGGGGAGGGGVGGFSTGYSAGLGGGGGIKHASQGDATDGADDDSDPDDDDSE
SGVVLRALSQPRGEEAGESTEEGGGGVESEHGGERLDQVTSRQLEALFQYSVTGDSAYLL
APQRPLMTAQDEDGDTGLHLAVLHSQQEALKSLTQVVSALPGQEVLNMRNHLYQTPLHLA
VITQQREAVEALLLAGADPTLTDRHGNTVLHLASQLEGGGIVKFLLQHRELRELLYHTNT
AGLCAIHLAVLANQLFSLRELLEGGANVEAQERSSGRTALHLATEAENVSLAGCLLLEGN
ANVDCCTFNGSTPLHIAAGRGSIKLTALLMAAGADPHKENFEPLFFRDEECCDEEREDED
EDEGYIPGTTPLNMAATTQVLELLNGKEYEPPQRAAVPPQGDLASLDMEVKQEVCRALES
EGCWENLAHGLGLGILNTAFRLSPSPAKTLLDSYEVSGGTVRDLLAGLRSVGECRALSVL
EEALRHLGDQETQAADETSGEALCAQVQDLKVDVRIDSGVCDSGVELSTA
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtccatggagaagactaccttcataatactcagatttttgagaacataatgatg
gatccatcgtgggactttacacattttgctgcgatgcctcagacggcgtccctgcggaca
gtggacggcccgtacctgcagatcgtggagcagcccaaacagcgtggcttcaggttccgg
tacggttgtgaaggtccgtctcacggcggtctgccgggagcctccagtgagaagaaccgg
aagacctaccccaccgtcaagatcattaactaccagggtccgtcccgggtggtggtgcag
ctggtgacggcgctgacccccctccctcagcttcacgctcacagtctggtgggaaaacag
tgtgacaaagggatctgcatcgccgacctgcagcccaaagacaccaacatcagttttccc
aacctgggcatcctccatgtgacgaagaagaacgtggcgaagactctggaggagaggatg
atcgaggccttcaggatgggatacaactgtggagtctccatccaccccgagatagacaac
ctgcggggggaagtccgggtcccccgagagctcaccgaccaccagcgcagtctgatcagc
agcgtggcgtctgtccaggctaaagaaatggacctcagcgtggttcgactcatgttcacg
gcgttcctccccgacagtgacggcggtttctccagacggctcgagcccgtcgtgtctgaa
ccgatctacgacagcaaggctcccaacgcctccaacctgaagatcgtgaggatggatcga
actgccggctgtgtgagcggaggagaggaggtctacctgctctgtgacaaagtccagaaa
gatgacatccaggttcggttctacgaagaagacgactcggggatgacctgggaggctctg
ggagatttctccccgacagatgttcacagacagttcgccatcgtgttcaagactccaaag
tatcgagaccagaacctgcagaagccgacgtccgtgtttgtccagctgaagaggaagtct
gacaacgagaccagcgagcccaaacccttcacctaccaccctcagatcatagacaaggag
gaggtgcagaggaagagacagaagacgttgccaaactttcaggactttagtggtcatgga
ggaggaggaggaggaggaggaggtctgtaccgaggaggaggaggaggaggaggaggtcct
gctgtaggaggaggacccggctctgcaggaggaggaggaggaggaggaggaggagcttac
ttccagggcttcactacctaccactatggaggaggtggggcgggtggaggcggagttgga
ggcttctccacaggatactcagccggtctggggggaggaggaggcatcaagcacgcctcc
cagggtgacgcaacagacggcgccgacgacgacagcgatccagacgacgacgactcggag
tctggggtcgtcctgagagctttatcccagccgagaggagaggaggcgggggagagtacg
gaggagggaggaggcggtgtggagtcagaacacggaggggagcggttggatcaggtgacc
agcagacagttggaggctctctttcagtactcggttacaggtgattcggcgtacctgttg
gctccacagcgccccctgatgaccgcacaggacgaggatggagacactgggctccatctg
gctgttctccacagccagcaggaggcgctgaagagtctgactcaggttgtctctgccctg
cctggacaggaagtgctcaacatgaggaaccacctctaccagactcctttgcacctggcg
gtgatcacccagcagagggaggcggtggaagcgctgctattggccggcgctgacccgact
ctgacagaccgtcatggcaacacagtgctccacctggcgtcccagctggaaggaggaggg
atagtcaagtttctgcttcagcacagagagctgagggagctgctgtaccacaccaacaca
gcaggtctgtgtgcaatccacctggcagtgctggccaatcagctgttttctctcagagag
ctgctggagggcggggctaacgtggaggctcaggagcgcagcagtggacggaccgccctt
cacctcgccaccgaggccgaaaacgtgtcgctggccggctgcctgctgctggagggaaac
gccaatgtggactgctgcacctttaatggctccacgcctctccacatcgctgcagggcgg
ggctcaatcaagctaacggcgctcctcatggctgcaggcgctgaccctcataaggagaac
tttgagccgctgttcttcagggacgaggagtgctgcgacgaggagagggaggatgaggat
gaagatgaaggctacatcccgggtaccactccgctcaacatggccgccaccactcaggtg
ttggagcttctgaatgggaaagagtacgaacctccacagagagctgctgtccctcctcaa
ggcgacctggcgagcctggacatggaggtgaagcaggaagtgtgtcgtgctctggagagc
gaaggatgctgggagaatctggctcacggtctgggtctcgggatcctcaacacggccttc
agactgagcccctcccccgccaaaacactgctggacagctacgaggtttcaggcgggacg
gtccgggatctgctggccggtctgaggtcagtgggagagtgcagagcgctgagcgtcctg
gaggaggcgctgcgtcacctcggcgaccaggaaacgcaggcggccgacgagacgagcggc
gaggctctgtgcgctcaggtccaggacctgaaggtggacgttcggatcgacagcggggtg
tgtgacagcggggtggagctctccacagcgtaa
DBGET
integrated database retrieval system
