Micropterus salmoides (largemouth bass): 119889704
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Entry
119889704 CDS
T07309
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03022
Basal transcription factors
msam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119889704 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
119889704 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msam03021
]
119889704 (ercc3)
03400 DNA repair and recombination proteins [BR:
msam03400
]
119889704 (ercc3)
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
119889704 (ercc3)
Transcription machinery [BR:
msam03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119889704 (ercc3)
DNA repair and recombination proteins [BR:
msam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119889704 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
119889704
NCBI-ProteinID:
XP_038556427
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MGKKDKGDREKKSKKRFHEEEDDEEEVVGNESQEGIPAAAGKQVDESSIKLDEYGAKDYR
AQMLLKNDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHIHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTMSYGKVKMVLKHNRYFVESAFP
DVIQRLLQDSVIRECRLRTADGADTELITEVIHSKSAISKSIEEKGGTSTSQLPGDGQTS
TQQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMRSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIHFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSSRDDQHQLLQKVLAAS
DLDAEEEVVAGEVGGRPQFSRRTGTMSSMSGADDTVYMEYQRSSKASAASKGVHPLFKRF
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaaggataaaggagatcgggaaaagaagtccaaaaaacgtttccatgaggag
gaagacgatgaagaggaggtagtgggcaatgagtctcaggaaggcatacctgctgctgca
gggaaacaagtggatgagtccagtataaaactggatgagtatggagccaaagactaccgt
gctcagatgctgctgaagaatgatcactcttcacgccccctatgggtggctccagatgga
cacatctttttggaagccttctcaccagtgtataagtacgcccaggatttcttggtggcc
attgcagagccagtgtgcaggcctaaccatatccacgagtacaagctgacggcctattcc
ctgtatgcggctgtcagtgtgggcctgcagacttctgatattgtggagtacctgcagaag
ctcagcaagacatctgtacctgatgggattgtacagttcattaagctctgcacaatgagc
tatggcaaagtcaagatggttctcaagcacaataggtattttgttgagagtgccttccct
gatgtgatccagcgccttctgcaggacagcgttatccgtgaatgtcgtctccgtaccgca
gatggagcggacactgagcttattactgaagtcatccacagcaagtcagcgatttccaag
tcaattgaggaaaagggaggtacttccacctcacagctgcctggcgatggacaaacgtca
acccagcaagtccctgaggacatcttcagttactatgagcagatggataaagaagaggag
gaggaagaagagactcagactgtgtcctttgagattcgccaggagatgatcgaagagctg
cagaagcgttgtattcagctggagtaccccctcctagcagagtacgactttcgcaatgat
acagtcaacccagacatcaacatagacctgaagcccactgctgtgttgcggccctaccag
gaaaagagtctgcgcaagatgtttgggaacggtcgtgctcgttctggggtcatcgtgctg
ccctgcggagcgggcaaatctctggtgggcgtgacagcagcgtgcacagtacgtaaacgc
tgcctggtgttgggtaactcctcagtgtcagtggagcagtggaagtctcagttcaagatg
tggtccactatcgatgactctcagatctgccgtttcacctccgacgccaaggataagccg
attggctgctcagtggccatcagcacctactctatgctgggtcacaccaccaagcgctcc
tgggaggctgagagggtcatggagtggatgcggagccaggagtggggactcattatcctg
gatgaggtgcacactatccctgccaagatgtttcgtcgtgttctaaccattgtccaggca
cactgcaaactgggcctcactgctacgctggtcagggaagacgacaagattgtggacctg
aacttcctaattgggcctaaactattcgaggccaactggatggaactgcagaacaatggc
tacattgccaaagtccagtgtgcagaggtgtggtgcccgatgtctccagagttttacaga
gagtatgtggccattaagacgaagaagcgcatcctgctttatacaatgaaccccaataag
ttccgtgcttgccagtttctcattcacttccacgagcggcgcaatgacaagattattgta
tttgctgacaacgtgtttgccttgaaggaatacgccattcgcctcaacaagccttacatc
tatggtccaacctctcagggggaacgtatgcagattttacagaacttcaaacataacccc
aagatcaacaccattttcatctccaaggttggagacacgtcatttgacctgccagaagct
aatgttctgatccagatctcctctcatggtggatcacgcagacaggaggcccagaggctt
ggcagagtcctacgagccaagaaaggaatggtagcagaggagtacaacgcatacttctat
tcactggtgtcccaggacacccaggagatggcttactccactaagagacagaggttcctg
gtggaccagggatacagctttaaggtgattacaaagttggcaggtatggaggaagaggac
ttgatgttctcctccagagatgaccaacaccagctgcttcagaaggtcctagctgcttca
gacctggatgctgaggaggaagtggtggctggggaggtgggcgggcgaccacagttctca
aggcgaacaggcaccatgagctccatgtcaggtgcagatgacactgtctacatggaatat
cagcgaagcagcaaagcctcagcagcaagcaagggcgtccatccattgttcaagcgcttc
agaaagtag
DBGET
integrated database retrieval system
