Micropterus salmoides (largemouth bass): 119890927
Help
Entry
119890927 CDS
T07309
Symbol
pkd1l2a
Name
(RefSeq) LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
msam04040
]
119890927 (pkd1l2a)
04091 Lectins [BR:
msam04091
]
119890927 (pkd1l2a)
Ion channels [BR:
msam04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119890927 (pkd1l2a)
Lectins [BR:
msam04091
]
C-Type lectins
Others
119890927 (pkd1l2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
SUEL_Lectin
Ion_trans
Lectin_C
REJ
PKD
GPS
MalQ_N
T7SS_ESX_EspC
Motif
Other DBs
NCBI-GeneID:
119890927
NCBI-ProteinID:
XP_038558267
LinkDB
All DBs
Position
Unknown
AA seq
2526 aa
AA seq
DB search
MESTTFPTLTLMVLFLSWTCCAEEDTEALPCPEYQEGFDGSCYEFVGLQRSFLSAQGWCE
QGGGHLAFILNDEIQQFLQKHLEPGRDWWLGLAPAAPNLTLDSAAIDGSLAWLDGSDVSY
SNWVNMPDAEAACGHILRHSGFQWEAAWNCSQELNFICQFDSGRSIACDGQNATLQCGSG
QVLDIDDSFYGRKTIHYCRSKLTASPTSSQEECSWIDVIDSVTAQCHGQQACQAPADLSS
FGEPCPALGSYLSVEYRCKQGLYLLMSKLAAVFDNVTITVXWLLHPFQGNLTCTLNAGDG
HTAEPYSPVEMESTVMHRFLRPGVFMVRVECTTSDWHVTAQKAINIQEPVGKFGVFKCYS
GNMSTDGTKCNALHGRPVQIQVMVEAGTNVSYSIQHEDHFIANSSVDRGITPHNITLSVS
VVEKLEHGCHXLTLTASNRVTARTVSTDLELCLLEPVEGLQASVIAEDKCPDSKDLIIGV
SLERGAPVELLFTLTGAGDTLSETRDMLNGSLQAYTFSSPLEGLLKVKVRAMNAFFASDA
DVDLENILQACQNYSDHSPDEHGNTTGNMSVYDSSGFKIIATPDTVVDYTQSVTLSVTGT
ESLPSKGLTFEWKCKGNCKCTNKTTDKIYVIPKDCLPDPFDNFSYALTVRRTTWFRKWVN
LASTSKCITVAPKEFTDVTISCDDCASINVNDHIKLRLICVTTCPEVVWYIGESRPLTGD
LEKCFSEAGRRPPIERQDGNTEYIVHSKHLKVSRDTLHNFSVIAYGKKEAGFAKYTFPIP
GPESAEPTVNSGVTSEAPADPRPPSCSISPLSGTVLDAFDITCKPSSFCSTGCFYCFKTD
TGKHLRCSNAHEVKSVFLPLGDKNNNYSLSVVVTVKNEYEKATTTVSTQVQKSSSSTSVG
ALQSAVKDTVSQLEQQGLLSGEALGQIFTSISDMLNTAAGQDQNNARRKLREQMLTKMTT
VLLDSPSNTTQEVQVTARAVAGLTQRPEELSPAAQEEAGSLLVDLSSSLNTISVNQDGGD
DGEVVQAATTIVEAASNVLNVSSNKKVSDFLLTGINNVQXALLNNKKLNGDPSIIDSGQI
SVYVNRVSPEKMKIQDINVQKSSSSRFSFPSLPAHIVAPEEPMDVRMMSFETNPFSWEEE
NITGTVGSVSLTRVNGTVIPVENLPDDIEILLPRLDVGENHSTVLDLASFSTLIIDVPSP
DITLVLKMEPSEDISFMLFLGCKDYPNEHNYIAKTQIPLENSKEEEKYTWVLSPEDRTGD
VGVHYLVMKPIVEPGVRSVNATVTVISIAAQCKYWNETKSSWSEDGCRVSNTHTTTVVAS
IHPLKVXLTGFVNFFPQVGPLTTPLVTQCLCNHLTFFGSSFFVMPNLVDVSRTAELFATF
TNNPVVVCFVGAIFTAYLLVVIWARRKDIHDSAKVKITVLEDNDPLAEYRYMLNFSTGHR
HGASTSSQVTIILLGTEGESEPHHLTDPDKPVFERGGVDMFLLTTHFSLGDLKSIRLWHD
NSGAHPAWYVNKVMVQDLESGQKWHFLCNSWLAVDVGDCTLDKVFPVATEMDLKRFSNLF
FMKTAKDFRDGHIWFSVISRPPSSTFTCVQRVSCCFSLLLCTMLTSIMFWGIPTDPSEQT
MDLGHIEFTWQQVMIGVQSSIIMFPINLLIVSIFRNTRPREKAANTDASIHGKTGRVSPS
QNSSPQKEMKDITPDTVIKDIKRIAQSLSKAMKSPLPDLELRPGQQADINTLLSLVEDII
RQQNRGAGDFYTEASKKDRSMILSLRAVDLQENSVWGSPERTSVEGQKKSNNSRYLYRQL
RHVEKELDLLGPSQFPKPDSYNRAMQQVQGMKGLLDFHLPSSSLEREQLDSSPSPEESIN
GDSTKKCCQGGLPWWFVFVGWILVIATSGVSGYFTMMYGLTYGKGRSISWLISMVVSFFE
SLFITQPLKVLGFAAFFALVLKKVDQEEYGEPQIDESLRNTDDPDVVRAARRDSTCSFYQ
PPPPTDIERMRNNIIKEQKVFALIREILTYMGFMWMLLLVAYGQRDPNAYFLTKHIRQSF
SRGISDSMSIQDVFNWANTTLLSSLFGEHPGFITDGNSKLVGNARLRQVRVHKNSCHVAT
SMQQSELDCHAPYSWELEDMGSYGPSWSHSVVDNSSLNSHTPWMYQSQGKLRAYPIWGSV
MLYRGGGFVVDLGPDLQTSSRTLQYLYDNTWFDVYTQAAFVEFTVYNANVNLFCIVTLML
ETTAIGAFQFRSELQSVRLYQSTGGLHIFVMASEAIYFLFIIYYMFVQGKLMKQQRWAYL
KSKWNLLELAIIILSWSALSVFIKRTLLGSRDMEYYHNNKDQYASFHETAKADAVLGYLI
AFLVLLATVKLWHLLRLNPKLHMITATLQRAWTDISGFLVVITIMFLAYSIASNLMYXWK
LYSYRTLLDAAQTMVSLQLGIFNYDEVLNYNPVLGAFLIGSSIVFMTFVVLNLFISVILV
AFSQEQIHHQPSEEDEIVDLMLMKLCSLFGLKYKNQGGDCLDERPAVTSASNNGLQTISS
GNICEG
NT seq
7581 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcaccactttccccacactgaccttgatggttctcttcctcagctggacttgc
tgtgctgaggaggatacagaggctctcccctgcccagaataccaggagggttttgatggc
tcttgctatgagtttgtgggtctgcagcgatccttcctcagtgctcagggatggtgtgag
caaggcggaggacacctagccttcatcctgaatgatgaaatacagcagttccttcaaaag
cacctggagccggggagggactggtggctcgggctggcacctgcagctccaaacctcacg
ctcgactctgctgctatcgatggttccttagcatggctggatggctcagatgtcagctat
agtaactgggtgaacatgccagatgcagaagcagcctgtggacatatcctgagacattca
ggcttccagtgggaagctgcatggaactgtagccaggagctcaacttcatttgccagttt
gattctgggagatctattgcatgtgacggccaaaatgcaacactgcaatgtggttctggt
caagttttagatatagacgacagcttctatggtcgaaaaacaattcactactgccgatcc
aaacttacagcctcgcccacatcctcccaggaggagtgcagctggatagatgttatagat
tctgtaacagcccagtgccatggacagcaggcttgccaggctccagctgatctcagctct
tttggtgaaccatgtcctgcgctggggagttacctgtctgtagagtaccgctgtaaacaa
ggactctacttgttgatgagcaagctggcggccgtctttgataatgtcaccatcacggtg
naatggctccttcatccttttcagggaaacctcacatgcacactgaatgctggggatggc
cacactgctgagccatacagcccagtagagatggagagcactgtgatgcacagattcctc
cgtcctggtgttttcatggttcgagtggagtgcaccaccagtgactggcatgttactgct
cagaaagccataaacattcaggagcctgttggaaagtttggtgtgtttaagtgctatagc
gggaacatgtcaacagatggcactaaatgcaatgcacttcatggtaggcctgttcagatc
caggtgatggtagaggcaggtacaaatgtttcctactcaattcaacacgaagaccacttc
attgcaaactcgtcagtggacagagggatcaccccccacaacattacactgagtgtaagt
gtggtggagaagcttgaacatggctgccacnccctgactctaactgcctctaacagggtc
acagctcgcacagtgtcaactgatctggagctgtgtctgctggagcctgttgaaggcctg
caggcctctgtgatagcagaggacaagtgtccagactctaaagatctcatcattggtgta
tcgttagagcgaggagcccctgtggagctgctcttcactctgactggagctggggacact
ctctccgagaccagagacatgctcaatggcagcttacaagcttatacattctccagccca
ctcgaaggattgttgaaggtgaaggtacgagccatgaatgccttctttgcttctgatgcg
gatgtggacttagagaacatacttcaggcttgccagaattactctgaccattcaccagat
gaacatgggaacacaacaggtaatatgagtgtctacgactctagtggcttcaaaataatt
gctactccagacactgtggtggactacactcagagtgtcacactgagcgtgactggaact
gaatcattaccaagcaaaggactcacatttgaatggaagtgtaaaggaaactgcaaatgc
acaaacaaaacaacggacaaaatttatgttatcccaaaagactgccttccagatcccttt
gataatttcagctacgctttaactgtgaggagaacgacctggttcaggaaatgggtcaac
cttgcttcaacttcaaagtgcatcactgttgctccaaaggaattcacagatgtcaccatc
agttgtgatgattgcgcttcaataaatgtgaacgaccacattaagctaagactgatctgt
gtgacaacttgcccagaggtagtttggtatattggggagtccagacctttgacaggtgac
ctcgaaaaatgtttctctgaagcaggaagaaggccacctatcgagaggcaggatggcaac
actgaatatattgtacatagcaaacatctgaaagtttcaagggacacattgcacaacttc
agtgtgattgcttatggcaagaaggaggcaggttttgccaagtacacgtttccaatacca
ggtcctgaatcagccgaaccaactgtaaactcaggagtgacatctgaagcccctgcagac
cccagacccccctcttgtagcatctctccgctttcaggaacagttctcgatgcttttgac
attacctgcaaaccaagctctttctgctctacgggctgtttttattgcttcaagacagac
acaggcaaacatctgcgctgcagtaatgcacatgaggtgaaatctgtcttcctgccgctc
ggagataagaacaataattacagtttgtctgttgtggtgactgtgaaaaatgaatatgag
aaagccactacaactgtttccactcaggtgcagaaaagcagctccagtacctctgtgggg
gctctgcaatctgcagtgaaggacactgtgagtcagttagagcagcaaggcctgctctcc
ggtgaggcactgggacaaatatttacttcaatttctgatatgttgaatacagcggcgggc
caggatcagaacaatgcgaggaggaagctcagagagcaaatgttgaccaaaatgaccaca
gttctgctggactcacccagcaacacaactcaggaagtgcaagtgacagccagagctgtg
gctggactcacccagcgcccagaggagctcagtcccgctgctcaagaagaagcgggctca
ctgttggtagacctcagctcctccctcaacactatcagtgttaatcaggacggtggggat
gatggagaagttgtgcaagcagctacaacaatagttgaagcagccagtaatgttttgaat
gtttcttcaaataaaaaggtctcagattttcttcttactgggataaacaatgttcaangt
gctttgctgaataataaaaaactgaatggagacccttccatcattgattctggtcagatc
agtgtgtacgtcaacagagtgtctcctgaaaagatgaaaattcaggatataaatgtccag
aagagcagctcctccagattttcgttcccctcactgcctgctcatattgtcgctccagag
gagccaatggatgtcagaatgatgagttttgagacaaatccgttttcttgggaggaggaa
aacatcacaggaactgtaggatccgtgtctctcaccagagtgaacggcactgtcattcct
gtagagaacttacctgacgatatagagattctcttaccaaggcttgacgttggggagaac
cacagcacagtcctggaccttgccagtttcagtacattaataattgatgttccctcaccg
gatataacactggtgctgaaaatggagccctctgaagacatttccttcatgctattcctg
ggatgtaaagattatccaaatgagcataattatatagccaagactcagatccctctagag
aattccaaagaagaagaaaaatatacctgggtgctgagtcccgaagacagaacaggagat
gttggagtgcactaccttgttatgaagcccattgtagagccaggcgtcagatccgtcaat
gccactgtcactgtcatttccatcgctgcccagtgcaaatactggaatgaaactaagtct
tcttggagtgaagatggatgcagggtgagtaacacacacaccaccacagtggttgcatct
atacaccctttaaaagtttgactgactggttttgttaatttttttccccaggtaggtccg
ctcaccacgcctttggtcactcagtgcctctgtaaccacttaactttctttggcagctcc
ttctttgtcatgccaaacttggtggatgtgtcgcgcaccgcagaactttttgctacattc
accaacaatcctgtggtggtgtgttttgtgggagccattttcactgcttatctcctggtg
gttatatgggcacgcaggaaagacatccacgactcagccaaggtgaagataacagtgctt
gaggataatgatcccttggctgagtatcgttatatgctgaatttcagcacagggcatcgg
catggtgcctccacctcctctcaggtgacaataattctgctgggtaccgagggagagagt
gagccccaccacctgacagaccctgataagccagtgtttgagagaggtggggtggacatg
tttctgctgaccacacacttttcccttggagatctaaagagcatcaggctgtggcacgac
aactcaggagctcaccctgcatggtatgtcaacaaagtaatggtgcaggatctggagagt
ggtcagaaatggcacttcctgtgtaactcctggctggctgtagatgtgggagactgcact
cttgacaaggtcttcccggtcgccacagagatggatttgaagaggtttagtaacctgttc
ttcatgaagacagccaaggatttccgtgacggccacatctggttctctgtcattagtcgg
cctccctccagcactttcacatgtgtgcagcgagtgtcctgctgtttttccctgctgctg
tgcaccatgctgaccagcatcatgttttggggcatccccaccgacccctctgagcagacc
atggacctgggtcacatcgagttcacctggcagcaagtcatgatcggagttcaaagttca
atcatcatgttccccattaatctccttattgtgagcatcttcagaaacactcgtcctcga
gagaaggccgccaacacggacgcatccatacatgggaagactggtcgagtttctccctca
cagaattcctcccctcagaaagagatgaaggacatcacaccagacactgtgatcaaggac
ataaagagaattgctcagtcactctcaaaggccatgaagagtccgctgcctgacctggag
ctccggcccggtcagcaggcggacatcaacactctgctgtctctggtggaggacatcata
agacagcagaaccgaggggcaggagacttttacactgaggcctccaagaaggatcgctct
atgatcctcagcttacgtgcagttgatctacaagaaaacagtgtgtgggggagccctgag
aggacttcagtagaaggtcagaagaagagcaacaacagcaggtacctgtacaggcagctg
cgtcatgttgagaaggagctggatttgttgggaccttctcagtttccaaagccagatagc
tacaaccgagccatgcagcaagttcagggaatgaagggtctcctggacttccacctaccc
tcgtctagcctggaaagagagcagctcgacagcagcccaagtccagaagagagcatcaat
ggagactccaccaagaagtgctgtcaaggaggtctgccatggtggtttgtgtttgttggc
tggatactggtgattgcaacaagtggtgtgtcgggatacttcaccatgatgtatgggctg
acgtacgggaaagggcgctctataagctggcttatctccatggtggtctccttctttgag
agtctttttattactcaacctctgaaggttcttggttttgctgctttctttgcacttgtt
ctgaagaaagttgaccaggaggagtacggagagcctcagatagatgagagtctgagaaac
acagatgatcctgatgtggtgcgtgcagcaagaagagacagcacatgcagtttctatcag
ccaccacctcccactgacatcgagaggatgaggaacaacataattaaagagcagaaagtc
tttgccctcataagggagattctcacctacatgggatttatgtggatgttgctcctggtg
gcgtatggtcagagggaccccaacgcttactttctgaccaaacacattcgtcagagcttc
agcagagggatctcagacagtatgagtattcaggatgtgttcaactgggcaaacacaact
ctgctgagcagcttgtttggagagcacccaggattcatcacagatggaaactccaagctg
gtgggtaacgctcgtcttcgtcaggtgagggtgcataaaaactcctgccatgtggctacc
tctatgcagcagtctgagcttgactgccacgctccgtactcatgggagctggaggacatg
ggctcctacggtccaagctggagccactctgtggttgataactcctcattgaacagtcac
acaccatggatgtatcagtcccagggtaaactgagggcctaccctatctggggtagtgtg
atgctctacagaggaggagggtttgtggtagatctggggccagatttacaaacttccagc
agaacccttcagtacctttatgacaacacctggtttgacgtgtacacccaagcagccttt
gtcgagttcaccgtgtacaatgccaacgtcaacctcttctgcatcgtcacactcatgctg
gagaccacagccatcggagctttccagttccgcagtgagcttcagagtgtgcgtctttac
cagtcgaccggcggccttcacatcttcgtcatggcttctgaagccatctacttcctcttc
atcatctattacatgtttgtccagggaaagctgatgaagcagcagaggtgggcttacctc
aagagtaagtggaatctactcgagctggcgattattattcttagctggagcgcattgtct
gtcttcatcaagaggactttactgggttcgcgggacatggagtactaccataacaacaaa
gaccaatacgccagtttccatgagacagccaaggctgatgcagtgctggggtatctgatt
gcattcctggtgctgttggctacagtcaaactgtggcacctgctgagactgaacccaaag
ctgcacatgatcacagccacgctgcagcgagcctggactgatatttcaggcttcctggtg
gtcataaccatcatgttcctggcctattccattgcttctaacctgatgtatnggtggaag
ctatactcctatcggactctgctggacgctgcacagaccatggtcagcctgcagcttggc
atttttaactacgatgaggttctgaattacaatccagtgcttggggctttccttatcggc
tcctccattgtgttcatgacctttgtggtgctgaacctcttcatctctgtcattctggtg
gcattcagtcaagagcagatacatcaccagccgtctgaagaggatgagattgtggacctg
atgctgatgaaactctgcagtttatttggactcaaatataagaatcaagggggtgactgc
ctggatgagaggccagctgtcacatctgcttcaaataatggactgcagacaatttcttct
gggaacatttgtgagggttga
DBGET
integrated database retrieval system
