Micropterus salmoides (largemouth bass): 119893271
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Entry
119893271 CDS
T07309
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msam03000
]
119893271 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
msam03310
]
119893271 (roraa)
Transcription factors [BR:
msam03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
119893271 (roraa)
Nuclear receptors [BR:
msam03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
119893271 (roraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
119893271
NCBI-ProteinID:
XP_038561227
LinkDB
All DBs
Position
Unknown
AA seq
519 aa
AA seq
DB search
MESPPDPASDPGNSASEPATPVRETPVNLETLRKADHPAPVRRQTCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTP
SYGLSANGLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFAPGSGFFPYCSFTNGDTSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVENYQSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcgagcgacccgggcaacagcgcctcggagccggctacc
ccggtcagggaaaccccggtaaacctggagacgctccggaaagcggaccatccagccccg
gttcgaaggcagacctgttcaagcaccaacagaggtatctcagtaacaaagaagacacat
acctctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggcgtgataacatgtgaaggctgtaagggcttctttaggaggagtcagcagagcaat
gcagcctactcctgccctcgtcagaagaactgcctgatcgaccgtaccagccgcaaccgc
tgccagcactgccggcttcagaagtgcctggcagtgggcatgtcacgagatgcggtgaag
tttggccgcatgtcgaagaagcagcgagacagcctgtatgctgaggtccagaagcaccgg
ctgcagcagcagcagcgtgaccaccaacagcagcctggagaggcggagccgctcacacct
agctatggcctctcagccaatggcctcacagagctccatgacgacctcagcggctacatg
gatggtcacacccctgatggcagcaaaccagactcggcagtcagcagcttctacctggac
atccagccatctcctgaccagtcaggcctggacatcaacggcatcaagccggagcccatc
tgcgactttgcccctggctctggcttcttcccttactgctccttcaccaatggagacacc
tcccccaccgtgtccatggctgaactagagcacctggcccagaatatctccaagtcacac
atggagacatgtcagtacctgagggaggagctgcagcagatgacctggcaggccttcctg
caggaagaggtggagaactaccagagcaagccccgggaagtcatgtggcagctgtgtgct
atcaaaataacagaggccattcagtatgtggtggagtttgccaagcgcatcgacggcttc
atggagctgtgtcagaacgatcagatagtgctgctgaaagcaggctctttggaagttgtg
tttgtcagaatgtgccgtgcctttgactcgcaaaacaacacagtttattttgatggcaag
tatgccggacctgatgtgttcaagtcattaggctgtgacgacttgatcagctccgtcttc
gagtttgggaaaaacttgtgttctatgcacctgtctgaggatgagatcgccctgttctcc
gcctttgtgttgatgtctgctgaccgatcctggctccaggagaaggtgaaggtggagaaa
ctccagcagaaaatccaactggccctccagcacgtcctgcagaagaaccacagagaggat
ggtatacttacaaagttgatatgcaaagtgtcgacactgcgagcgctgtgcagtaggcat
acagagaagcttacagctttcaaagcaatatacccagacattgtgcgtgcccacttcccc
cccttatacaaggagctgtttggatcagactttgagcagtccatgcccgttgacgggtag
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