Micropterus salmoides (largemouth bass): 119893458
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Entry
119893458 CDS
T07309
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msam03000
]
119893458 (ctcf)
03036 Chromosome and associated proteins [BR:
msam03036
]
119893458 (ctcf)
Transcription factors [BR:
msam03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
119893458 (ctcf)
Chromosome and associated proteins [BR:
msam03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
119893458 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
Zf-C2H2_ZNF451
zf-met
zf-C2HE
zf-C2H2_6
zf-C2H2_15
zf-WIZ
zf-C2H2_ZN142
Motif
Other DBs
NCBI-GeneID:
119893458
NCBI-ProteinID:
XP_038561563
LinkDB
All DBs
Position
Unknown
AA seq
872 aa
AA seq
DB search
MTALQTAAQSTEMMKTVNLSLLLQFLPSMDGGPTEGVGGVEVSAKDFPSIQAVHSQDAMV
ADLLQQAAEAGAVVDGQAGVLLDQGHGEGMVAATQQQLMEAGVGVSVEGGAGVEMMVMDS
LDPTLLQMKTEVIDAAVGGSSATVGVVGGVAGAAHQATVTTVDQTQIITLQVVNMEEQAA
LGLGELQLVQVPVSATTVEALQQGTFVDTTAMPKDGDPVICHTLPLPEGFQVVKVGANGE
VETVEQEEGGGEAHPEEEEDEEVGNQLMEEGEDEPIQPPTDDPNWAKDPDYQPPSGVVKK
TKKGKKSRLRYAEGDKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKKGVK
KTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHK
CTDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSL
CSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCD
TVIARKSDLGVHLRKQHSFIETGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDMCDYC
CRQERHMVMHRRTHTGEKPYACSQCEKTFRQKQLLDMHFKRYHDPNFVPTAFVCPKCSKT
FTRRNTMARHAENCSGEVEDAENGAPTPKKGRRGRKRKMRSRRDEDDSEDDHAEPDEDEE
AEGEGEEEASLLQEEEEAESMELDQAPAAIPVPAPDEPPVKRKRGRPPKNAPKPPTPCKS
VRVAAKMTASAAAIIQVEDESTGAVENIIVKKEDGDASVATPLEQGVALTVEGVGLDGEG
VETVELAVNEETAAAAANGDLTPEMILSMMDR
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgacagccctgcagactgcagcccagtctacagaaatgatgaaaacagttaatttatcg
ttgcttctccagttcctacccagcatggacggagggccaacagagggtgttgggggggtg
gaggtctctgccaaagacttcccctccatccaggccgttcacagccaggatgccatggtg
gctgatctcctacagcaagctgcagaggccggggccgtagtagacggacaagctggagtc
ctcctggatcaaggtcacggggaaggaatggtagcagccacccagcagcagctgatggaa
gctggggtgggagttagtgtggaaggtggagcaggggttgaaatgatggttatggactca
ctggatcctaccctgttacagatgaagactgaggtgatcgatgctgcagtcgggggatca
tcagcgactgtgggtgttgttggaggggtagcgggtgctgctcaccaagcaactgtaaca
acagtggaccagactcaaatcatcacactacaggtggtaaacatggaggagcaagcggct
ttaggtctgggggagcttcagctggtccaggtgcctgtttctgccaccactgtagaggcc
ctgcaacaaggcacgtttgtagacacaacagctatgccaaaggacggagacccggttatc
tgccacaccttgcctctgcctgagggctttcaggtagttaaggttggtgctaatggggag
gtggagacagtggagcaggaggaagggggaggcgaagcccaccctgaagaggaggaagat
gaggaggtggggaaccagcttatggaagaaggggaggatgagcccattcagcctccaact
gatgacccaaactgggctaaagacccggactatcagccaccatctggagttgtcaagaag
accaaaaagggtaagaagagtcgtctgcgctatgctgaaggagataaggacatggatgtc
agtgtgtatgactttgaagaggaacagcaggagggccttctgtctgaggtcaacgctgag
aaagtagtgggcaacatgaaaccacccaaacccaccaagatcaagaagaaaggagtgaag
aagacgtttcagtgtgagctgtgtagctatacctgccctcgacgctccaacctggacaga
cacatgaagagccacacagacgaaagacctcacaaatgtcacttgtgtggaagagccttc
aggacggtcaccctgctgagaaaccatctcaatacacatacgggaactcgtccacacaag
tgcacagactgtgatatggcttttgtgactagtggggagctggttcgtcatcgtcgctac
aaacacacacatgagaaacccttcaaatgctcaatgtgtgactatgccagtgttgaggtg
agcaaactaaaacgccacattcggtcccacactggcgagcgcccattccagtgcagtctt
tgcagctacgcgagtagagacacatacaagctgaagagacacatgaggacacactcagga
gaaaaaccttatgagtgttacatctgccatgcccgattcacccagagtggaaccatgaag
atgcacattctgcagaagcatacagagaatgtggccaaattccactgtccacactgtgac
actgtcatcgcacgcaagagtgacttaggtgtgcaccttcgtaagcagcactcatttatt
gagactggaaaaaagtgtcgttactgtgacgccgttttccatgagcgctacgctctgatt
cagcatcagaagtcccacaagaatgagaagaggttcaaatgcgacatgtgtgactactgc
tgccgccaggaacgccacatggtgatgcatcgtcgaacccacaccggagagaaaccatac
gcctgcagccagtgtgaaaagaccttcagacagaagcagctgctggacatgcacttcaaa
cgctaccacgaccccaactttgttcccaccgccttcgtctgtcccaagtgtagtaagaca
ttcactcgcaggaacaccatggctcgccatgctgagaactgcagcggtgaggtggaggat
gctgagaatggagctccaaccccaaagaaagggaggagaggaagaaagaggaagatgagg
agcaggagagatgaggatgacagtgaggatgatcacgctgaacctgacgaagacgaggag
gctgagggggagggggaggaagaagcatcactgctacaggaagaggaggaggcagaaagc
atggaattggatcaggcccctgccgccatcccagtaccggctcctgatgagccaccggtc
aagaggaaacgaggccgacccccaaaaaatgcccccaagcctccaacaccctgcaagtca
gttagggtggctgccaagatgactgcttctgctgctgcaatcattcaggtggaagatgag
agcactggagcagtagagaacatcatagtgaagaaggaggatggcgatgcctctgtagcg
acaccgctggagcagggagtggccctgactgtggagggggtggggctagacggggaaggg
gtggagactgttgagctggctgtgaatgaggaaacagcggccgctgctgccaacggagat
ctgacaccagagatgatcctcagcatgatggaccggtga
DBGET
integrated database retrieval system
