Micropterus salmoides (largemouth bass): 119893938
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Entry
119893938 CDS
T07309
Symbol
tdrd12
Name
(RefSeq) LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
msam03036
]
119893938 (tdrd12)
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
119893938 (tdrd12)
Chromosome and associated proteins [BR:
msam03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119893938 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TUDOR
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
119893938
NCBI-ProteinID:
XP_038562280
LinkDB
All DBs
Position
Unknown
AA seq
1328 aa
AA seq
DB search
MLKISILKVENPSCIWGRAVWGCGGDANTAEQYDNLLVQMNLFYHDVTQDHRNLKPTSLE
EGQVCVVYWSVMKSWCRAVVESVIMDSRSCHARCLLVDHGERLVVPSEQIRVAVQKFLKL
PFWVRRFHLARIKPTTLRVSVHEEKAVLIPSSQWDSSATLYLHNLLKASTQTEVVLLESE
SCSTAIELYLTVGNIKICVNDDLVAKKFAYFIRESADSGWLDEVDRFPITVSSNILNQTV
CTASNKPTAQIQPPPVMSQGLAAAGAGDWLMAAPTPESQQPELKTCEEGCRSKVTEEQLS
PGSRSKNGSDSAAAAESESSEDTDSSLAADLANDLSLFRLLKFLNPGSSYQQAAPSVSQH
EELKDRHPGETTAAFSTCTGQEVCIPSYNSESVTPHRDPLLSMSGRSGAEGLRENGQVEY
LADEETSSSSRSVDSGPTEKTWRSEEDWLCSRLLEWLNPEPLNADPDAADNVVVPRDPRK
TGILVHSVLPVDPCTSLDDAPITDSLCWVLRRKQYSALSPADGYSWPAVARGCSTLIISH
DADQPRSYLPPLLTHILLNSIFISSTSAGPIAVLLCPGWEKVQAVYDQLEELKVNTTLHP
LIVLLGVGKDEARXVRIPKNCLLMVSTPFSFVRLLSSHRFLFLRLHHLVLDEADQLFALA
PDEMGTILQHFHKVTSTQNGSSPKQLVAVAKRWTGHLEGLLANHMLYPCIVITLPEEAAL
YGNVQQITLMTLETSKINILLGALDFKPDVGQKTLIVASSAQEVEDVFKVMSTKSGFCLK
THEGLTREFDFVIQQWRKDIGRGTHVLLVTTNECLQCLGITDANCVVHYDFPTSPKIFGS
RLFCMADNFRNLSARKSLQDHMGSCPHPARSVLLISERNTCHVIGLLRYLVRTKSPLPPE
LLSFAEGIHVAREEQKIDRPLCSYLKSFGVCRYRSVCPERHRPLSHLDQSVLPASGVVEV
LPLYIKTASMFYGRIVKKEDGGFTSMASEMTSYFADKKPGAKELLEGGLYAVQEDDVFHR
VKILSVPDRGDRLFFSVYVRFIDVGKEEEVKSHQILQLPEQFHSLPGQAVEIVVCRVKPV
DGEIDWHPKVTRAISQKIRGLQHRARAVFSLGNTIFVDPMVRVTQLPGVKTVINEYKVRS
EILNTGMGVSNPEHLDLLRALHQETKSGSGEEAGHISRTADGPVSLEVRIKAEEDVLAQV
LRSAEDSGLADLPPLEPCEPLGPVSLVIRSPVPSPPAAEPHLHPVCDQKSLPALRAAIGQ
EDAHAADPKSAQQMMRNRDGGELPTPCENGDAESNSQQVISTNEAGCPDSRKVSTLRSAG
SRHLTLRS
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagatatcgattttgaaggtggagaacccgtcctgcatctggggtcgggctgtt
tgggggtgtggcggtgatgctaatacagcagagcagtatgacaacctgctggttcagatg
aacctcttctaccacgacgtcacccaggaccatcgcaatctgaagcccacgtcgttggag
gagggacaggtgtgtgtggtgtactggtcagtgatgaagtcgtggtgtcgggctgtggtg
gagtcggtcattatggactccaggtcctgtcacgctcgctgcttgctggtcgaccacgga
gaacgactcgttgtcccctcagaacaaatccgagtcgctgtgcaaaaattcctcaagctg
cccttctgggtgaggaggttccacctggcgagaatcaaaccaacaaccctgcgtgtgtct
gtccacgaggagaaggcagtgctcattccatcctctcagtgggacagctctgctacactc
tacctgcacaacctgcttaaagcgtcgacccagacggaggttgtgttgcttgaatccgag
tcatgctccaccgctattgagctttatctgaccgtgggaaacatcaagatctgtgtgaat
gacgatttggtggccaagaagtttgcatatttcatcagagagtcagctgacagtggctgg
ctcgacgaggtcgaccgatttcccatcacggtgtcctccaacatcttaaaccagaccgtc
tgcacggcctcaaataagccaacagcacaaatccaaccacctcctgtgatgtcacaaggt
ctggctgcagccggagctggtgattggctgatggctgcccctacacctgagagccaacaa
cctgagctgaagacctgtgaggaaggatgcaggtcaaaggtcacagaagaacaactgtct
ccaggcagccgatcaaagaatggctcagactctgctgctgctgcagagagtgaatcgtca
gaggacacagactcgtctctggctgcagatctggccaatgacctcagtctgttcaggctc
ctgaagtttctgaatcctggcagcagctaccagcaggcggctccaagcgtcagtcagcat
gaagagctaaaagaccgtcaccctggagagacaactgcagccttcagcacctgcactgga
caggaagtatgtatcccatcatacaacagtgagtctgtaacgccgcacagggaccctttg
ctcagtatgagtggcagaagtggagctgaaggtcttcgtgagaacggtcaggttgaatat
ctggcagatgaagaaacgagcagttcgagtagatcagtcgattcgggaccaaccgagaag
acgtggaggagtgaagaggactggctctgttcacgccttctggagtggttgaacccggag
cctctgaacgctgatccagatgctgcagacaacgtggttgttccccgggaccccaggaag
actgggattctggtgcactctgtcctcccggtggatccctgcaccagcctggatgatgct
cccatcacggattctctctgctgggtgttacggaggaagcagtacagcgctctgtctcca
gctgacggttacagctggccagctgtggctcgaggatgcagcactttgatcatctctcat
gacgctgaccagccacgcagctacctccccccgctcctcacccacatcctgctcaactcc
atcttcatctcttcaaccagcgcagggcccatagccgtgctgctgtgtccaggctgggag
aaggtccaggcggtgtatgaccagctggaggagctcaaggtcaacacaaccctgcaccct
ctcatcgtgctcctaggtgtcggcaaagacgaagcaaggnccgtcaggatccccaaaaac
tgcctgttgatggtgtccactccgttcagcttcgtccgtctgctgtccagccatcgcttc
ctgttcctgcgtctgcaccacctggtgctggacgaggctgaccagctgttcgctctcgct
ccagacgagatggggaccatcttgcagcatttccacaaggtgacctccacccagaacggt
tccagtcctaagcagctcgtcgctgtggcgaaaagatggaccggtcatctggagggtttg
ttagccaatcacatgctatacccctgcattgtcatcactctgcctgaggaagccgctctc
tatggcaacgttcaacagatcaccctcatgacactggagaccagtaagatcaacatactg
ttgggtgcactggatttcaaacccgatgtcggccagaagacgctgatcgtagccagctcc
gctcaggaagttgaagacgtgttcaaggtcatgagcaccaaatcaggcttctgcctcaag
acccacgaggggttaacacgcgagtttgactttgtcatccagcagtggaggaaagacatc
ggccgcggcactcatgttcttctggtgaccaccaacgagtgtctgcagtgtctgggaatc
acagacgcgaactgtgtcgtccactacgacttccccacttcgcccaaaatattcggcagc
cgactgttctgcatggccgacaactttagaaacctttcagcgcgaaaatccctccaggat
cacatggggagctgccctcatcccgccaggtctgtgctgctgatatcggagaggaacacc
tgccatgtaattgggcttctgcgatacctggtgcgaaccaagtccccgttgccccctgag
ctgctgtcctttgccgagggcatccacgtggcccgggaggagcagaagatagacaggcct
ctgtgcagctacctgaagagtttcggagtctgcagataccgcagcgtgtgtcctgagcgt
cacagaccgctttcccacctggatcagtctgtgcttcctgcgtccggagtcgtagaggtt
ttgcctctctacattaagacggcgtcgatgttctacggacggattgtcaagaaggaggac
ggaggtttcacgagcatggcgtctgaaatgacgtcttactttgccgacaagaaacctgga
gccaaggagctgctggagggaggcctgtacgccgtgcaggaggatgacgtcttccacagg
gtgaagatcctgtctgtcccagacagaggtgaccggctgtttttcagcgtatatgttcgg
tttattgacgtgggaaaggaggaggaggtcaagtcccatcagatcctccagctcccagag
cagtttcactctctgcccggccaggccgtggagatcgtcgtctgcagggtcaaaccagtc
gacggagagattgactggcaccccaaggtcaccagagcgatcagccagaagatccgaggt
ctgcagcaccgagccagagcagttttcagtctgggaaacaccatttttgttgatcccatg
gtccgtgtgacccagttgccaggcgtgaaaactgtgatcaatgaatacaaggtacgttca
gagatcctgaacactgggatgggagtcagcaacccggagcatctggacctgctgagggcg
ctccaccaggagaccaaatccggcagcggtgaggaggcgggtcacatttctaggacggcc
gatggtccggtgtctctggaggtcaggatcaaagctgaggaggacgttctggctcaagtc
ttgaggtcagcagaggacagcggactcgctgaccttcctcccctcgaaccatgtgagcca
cttggtccagtatctttagtgatccggtccccggtcccatcaccaccagcagctgaaccc
cacctgcatccagtgtgtgatcagaaatccctgccggcccttcgagcagcgattggacag
gaagacgcccacgctgctgatccgaagtcagctcagcagatgatgaggaacagagatgga
ggagaacttcccaccccctgtgaaaatggtgacgctgaaagcaacagccagcaggtcatc
agcactaatgaagcaggctgccctgactccagaaaagtttccaccctcaggtccgctggt
tccagacatctgactctgcgatcgtaa
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integrated database retrieval system
