Micropterus salmoides (largemouth bass): 119893981
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Entry
119893981 CDS
T07309
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msam03009
]
119893981 (ighmbp2)
03012 Translation factors [BR:
msam03012
]
119893981 (ighmbp2)
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119893981 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
119893981 (ighmbp2)
Ribosome biogenesis [BR:
msam03009
]
Eukaryotic type
Other ribosome biogenesis factors
119893981 (ighmbp2)
Translation factors [BR:
msam03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119893981 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
ResIII
nSTAND3
Helicase_RecD
AAA_16
AAA_22
IstB_IS21
Flavi_DEAD
UvrD-helicase
DnaB_C
AAA_25
ABC_tran
PhoH
AAA
ATPase_2
ATPase
NPHP3_N
SLFN-g3_helicase
NTPase_1
hDGE_amylase
Motif
Other DBs
NCBI-GeneID:
119893981
NCBI-ProteinID:
XP_038562361
LinkDB
All DBs
Position
Unknown
AA seq
992 aa
AA seq
DB search
MAIEQFVSKTLELLQEEREAEIEETRIWQENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VVVLEPRKHLGFLSLPSNSFGPGDIVGLYDTGGCTAASQIGTGIVTRVSQASVSVAFDDS
KGGLSFDTDALYNLLKLANDVTYKRMKKALNELNGYRNGPAANLINVLFGESKPSSQSQP
NEVEFFNSNLDDSQREAVSFALSQRELAVIHGPPGTGKTTTVLEIILQAVKQGQKVLCCA
PSNVAVDNLVERLAWCKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIIADIRKDIDK
AFMGMKKREKGERVNFKREIGELRKELKTREATAITQILKSADVVLSTNTGACDGSPLKF
LPEAHFDWVVIDECAQALESSCWIALLRARKCILAGDYKQLPPTIKSQTAASKGLSLSLM
ERLIQMYGDSVVRMLTVQYRMNSAIMEWASKEMYQGRLTAHSSVERHVLKDLPGVACVEE
TSAPLLLIDTAGCGLSEMDVTDEQSKGNQGEVDIVELHIKALTEAGVKAKDIAVIAPYNL
QVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVTR
ARRHITVVCDTQTVQNHAFLKSLIDHITEFGEVRTAFEYIQDIVPQNYTRDHKDTKANTS
ASSSTANKQKVKDQPPSKAKQEQRKSTGSSSNENTANTKYAKSSITTLTEEEQKKNRYAE
IREQVESFLKDLNRSELEFPSSFNSHDRLLVHQVAEELGLVHESKGEGKDRCITVSRPLV
STPAEQPTQKEEEEEEGEEEEETVANPQRQTLCQPPLDLKSLHLERMKREQQKREENAQQ
KKQQNIPPALAQSSKKPKSVKGKNRTKAGACDIAAAAAPDDDFDTLINAVRKAESVCSFV
KCKASVLTLGQLCPFCNRQYCLSHHIPEVHGCGDKAKSHARMRISKEGVLYAGSGKKDKS
MDPNKKAYLQRKLDSKLKDMASQRKPKNKEDN
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgaacaatttgtgtcaaagacgctcgagcttctgcaggaggagagggaggct
gaaatagaggagacccggatatggcaggaaaacatctctctcaaggatcttcaaaataaa
ggagtttgcctgctgaaattgcagataggaagtcagtccacaggtctctatggtcgcaca
gtagtcgtccttgagccaagaaagcatcttggtttcttatctctgccaagcaacagcttt
ggacctggggacatagttggcttgtacgacaccggcggatgcaccgcagcctcacagatc
ggcacaggaatagtgacgagggtcagccaagcttctgtaagcgtggcctttgacgattct
aagggtggtctcagctttgatacagatgctctttacaacctcttaaagttggcaaatgac
gtcacttacaaacgaatgaaaaaggccttgaatgaattaaatggatacagaaatggacca
gctgctaatcttataaatgttctttttggagaatcaaaaccttcgtctcaatcacagcca
aatgaagtggagttctttaactcaaacctggatgattcccagagagaagctgtgtccttt
gctttgtctcagagggaactggctgtgattcatggaccaccaggcactgggaaaactact
acagtgttggagataatcctgcaagcagtcaaacaaggccaaaaggtcctgtgttgtgcc
ccctctaatgtggctgtggataatttagtggagaggttagcctggtgcaaggcgaaggtc
ctgaggctgggtcaccctgccagactgttggagtccatacagaaacattcacttgacgcc
atcctcgctcagagtgacaacgcaaacatcatcgcagacatccgtaaagacattgataaa
gcatttatgggaatgaagaagcgtgaaaaaggagagcgagtgaacttcaaaagggaaata
ggggagctaagaaaagaactgaaaaccagggaagcaaccgccatcacccagatcctaaaa
agtgctgatgttgtgttatcaaccaacacaggtgcttgtgatggcagccctctgaagttc
ctgcctgaggcgcattttgattgggtggtgatagacgagtgcgctcaggccctggagagc
agctgctggatcgccctgctcagagcgcgcaagtgcattctggcaggagactacaaacag
ctaccacctactatcaaatcacaaacggctgcatctaaaggcttgtctctcagtcttatg
gagagactaatccagatgtatggggactcagtggtccgtatgctaacagttcagtaccga
atgaacagtgccatcatggagtgggcctccaaagagatgtaccaaggaagactaacagct
cacagctctgtagagagacatgtgttaaaagatcttccaggagtcgcctgtgtcgaagag
accagcgcaccgttgcttcttatcgatactgcgggctgtggtctgagtgagatggacgtc
acagatgagcagtccaaaggcaatcaaggtgaagtagacattgttgaattgcacataaag
gccttgactgaagctggggttaaagctaaagacatagctgttattgctccgtacaatcta
caagtcgatctactgcgccagaaactgtctgcgaggcacccagagctggagataaagtca
gtggatgggtttcagggcagagagaaagaggctgtggtgttgtcattagtccggtccaac
agaaaaggggaagttggatttctggcagaggaccgaaggattaatgtggctgttacacga
gcgagacgtcacatcactgtagtgtgcgacactcaaactgtccagaatcatgctttcctg
aagtccctgatcgatcatataactgagtttggcgaggtgagaacagcatttgaatacatc
caagacatcgtgccacagaactacacccgcgaccacaaagacaccaaggctaatacgtct
gccagcagctccacagccaacaaacagaaagtgaaagatcagcctcccagcaaggcgaag
caagaacagaggaagtccactggtagcagcagtaatgaaaatactgctaatactaagtat
gcaaagtccagcataacaacactgacagaagaagagcagaagaagaacagatacgctgag
atcagagagcaggtggagagctttctaaaagacttaaatcggagtgaactagagtttcca
tcatcgtttaactctcatgaccgcctgctggtccaccaggtcgctgaggagctgggcctc
gttcatgagagtaaaggcgagggtaaagacaggtgtatcactgtctccaggcccctggtg
tcaacaccagctgaacagccaacacaaaaggaggaggaagaggaggagggagaagaagaa
gaggaaactgttgcaaatccccaaagacagacactgtgtcaaccaccattagacctgaaa
agtttacatttggagcggatgaagagggagcagcagaaaagggaagaaaatgctcaacaa
aaaaagcaacagaacatcccaccagctctggcccagtcatcgaagaagcccaagtcagtt
aaaggaaagaaccgaacgaaggcaggcgcctgcgacattgctgctgccgccgctccagat
gatgactttgacacacttatcaacgctgtcaggaaagctgagagtgtgtgcagttttgtg
aagtgtaaagcttcagtgctaacacttggacagctttgcccgttctgcaacagacagtat
tgtctcagtcatcatataccagaggttcatggctgtggagacaaagccaagtctcatgct
cggatgagaataagcaaagaaggcgttctttatgccgggagtgggaagaaagacaaatcc
atggaccctaataagaaagcctatctgcagaggaaactggactctaaactgaaagatatg
gcatcacagaggaaaccaaaaaacaaagaggacaattaa
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