Micropterus salmoides (largemouth bass): 119894459
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Entry
119894459 CDS
T07309
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119894459 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119894459 (edc4)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119894459 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
119894459 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
RMC1_N
WDR55
PIN_8
Motif
Other DBs
NCBI-GeneID:
119894459
NCBI-ProteinID:
XP_038563154
LinkDB
All DBs
Position
Unknown
AA seq
1394 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSTDAQSSDGLRMPSFNGELNGLLGAAGLLGSSD
RSAMSESTRPISTDISSAQETQIICLSGDDGSTSIPITSNSVEIVASQDSSINSKARGSN
KVKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVGFAERSLLKGFTG
AVTDLVFAHLDSSLLGCVDEAGNLMVWQLTCTGNKILDQVVVHVRRPEDTPLNSHRRLIW
CPYIQDDNEENQDDTSQTLALLHEDRAEVWDLEVLRANNSSWPIDATDLKEGLITIKGHT
QRVSEGALSPDGTVLATASHDGYVKFWQIYIEGVQDKPRCLHELRPHGGRPVSCLLFCDN
HKRQDPEVPFWRFLITGADQNQELKVWCTVSWTCLQTIRFSPDLFNSSILPSLKASLDLS
AEYLILTDVQRKVLYVMELRQDLEKGKATFTAVSEFLLTHPVLSFGVREVAHSRLRHTEV
LPAEEESESLTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNLSSSSAVFLPRSD
SQDGFAGFSDHLTDQSSDKESGSGSQTDLRKIPSLPAPTDFLSNSATSSGTMPKLMTPDA
FMTPSTSVPASPGSSASSLTIVTAVSSNSDSTNRAIDDVSQSPNRAENNSSSSLALSTST
SSPRASSAVLLSGLEKLQALASPSGPLALDSPQILDSPLLPTLASPTRARSPDVISSAST
AMSQDMPEIASQTLQLQRGLMSSLEPLPLSALQTDSMASAASALHLLTSPRTANNNSLLH
LEIGGADGPVGGAVESEPRLSHTPSLLENALSQENPGVGGGSSDGNVSHTSWPAAPDITR
ETRNSLRDNGLGDGSREESKDRHLSSPYHRRSYHLTQNDSQDAGAEQSDPDDEVASLASS
SGHCGTRSSHRLPVKDWKTSPRASPKLKRKTKKDDTESSHSRQMDSSQMNAEVQDELLML
LRSQQRELTELRGQIEAMQSSIMAQVEHVLTNHQEQEQRRMERVLAESQNHQQQLQEQLS
QQLSHTLGSVLTNRMDKVLREEMKKTVPQTISKSLEPVTGQLSNTIAAKLTAVEVTLKDN
VTKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQG
TQEYIQQLETHMKNKKQREQETRDPMVGQLQQMIDSFQSSSDQLANNITANVRAEVQHQI
QMMVGNLQESILSHVQRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQ
QANILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLIQQ
LSSNLTTRSELKISYLEDAVMNLDHGDPLTRDHMAAVLAQVRPKLFAFLQQDPQSPLSKR
ARRLMMMLQGLVNH
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattctaatattgatattgagggtgcgacccagcatctccgggacatactc
aagctcgaccgtcccgggaacagcaccgatgcacaatcaagtgacggtctgagaatgccg
tctttcaatggagagctgaatgggttattgggagcagctggccttttaggaagcagcgat
cgctcagccatgtcagaatctaccaggcccatctccacagacatcagcagcgctcaggag
actcagataatctgcctttctggtgacgatggctccacctctatccccatcacctcaaac
agtgtggagattgtggcaagtcaagattctagtatcaatagcaaggctcgtggcagcaac
aaggtgaagatacaacctgttgccaagtacgactgggaacacaagtattattatggaaga
ctgatagccgtgtccaactccttcttggcctacgctatcagaggagccaacaatcatgca
atgattcgtgtcctgagtgtgggttttgctgagcgctccctactgaagggcttcaccgga
gccgtcacagatctggtttttgcccacctcgactcttccctgttgggctgtgtagatgaa
gcaggcaacctgatggtctggcagctcacttgcactggaaacaagatacttgatcaggtg
gtggttcatgtccgtcggccagaagatactccactgaactcccaccgtcgcctcatctgg
tgcccctacatccaggatgacaatgaagagaaccaggatgacaccagccagactttagcc
cttctacatgaagacagggctgaggtgtgggacctggaagtcctgagagccaacaacagc
agttggcccatcgatgccacagacctaaaagaaggcctcatcacaatcaagggacatacc
cagcgagtcagtgaaggggctctttctccagatggaaccgtgttagccacagccagccat
gatggatacgtcaagttctggcagatatacatagagggggtacaggacaagccgagatgt
cttcatgaattgcggcctcacggaggacgtcccgtctcctgccttcttttctgtgacaac
cacaagaggcaggaccccgaggttcctttctggcgtttcctgattactggagcagatcag
aaccaggagttaaaagtgtggtgcactgtttcctggacctgtttacagaccatcaggttt
tctccagatctgttcaactcatcaattctgccaagtctgaaggccagtctggacctctct
gctgagtatctcatcctcactgatgtacagaggaaggtactgtatgtgatggagctgcgg
caggacctggagaaaggcaaggccactttcacagcggtatcagagttcctgctgacacac
cctgtgctcagctttggggtccgggaagtcgcccacagtcgattgcgacacactgaggtc
ctccctgcagaagaggagagtgagagcctgacaacagagggcactcaaggacccacagag
tccaagtctgggatccaaattaaactctactgtgttcacaccaagagtctgcaggatgtc
cagatctggtttcagcctaacttaagttccagctctgctgtcttcctgccccgttctgat
tctcaggatggttttgcagggttttcagaccatctcactgaccagagctctgacaaggaa
tcgggaagtggctcccagaccgacctaaggaagatcccatcgcttcctgctcccactgac
ttcctgtcaaactcggccaccagcagcgggacgatgccaaagctgatgactcctgatgct
ttcatgacaccaagtacttcggtaccagcttctcctggcagcagcgccagcagtctgacc
attgtgacagctgtcagcagcaactctgactcaaccaacagagctatagacgatgtcagt
cagagtcctaacagagcagagaacaacagcagcagtagtttggcactgtccacctccacc
agcagcccgagagcttcttctgctgtgctgctgtctggcctggagaagctacaggcttta
gcgtccccaagtggccctcttgcacttgacagccctcagattttggattctcccctcctg
ccgactctagcctctccgaccagggcccgttcccctgacgtcatctcctccgcttctaca
gccatgtctcaggacatgccagagattgcttcccaaaccctgcagctccagcgtggactc
atgtccagcttggagcccttacctctttctgctctccagacagacagcatggcctctgct
gcatctgccctgcacctactcacctcgccacgcacagcaaacaacaacagcctgttgcac
ctcgaaatcggaggggcagacggaccagtgggtggggcagtagagtcagagcccagactc
agccacaccccatctctacttgagaacgccttatcacaggagaaccctggtgttggagga
gggtcctcagatggtaacgttagccacacatcttggccggctgcgcccgacatcactaga
gaaacgaggaacagcctcagggacaatggtcttggagacggttcaagagaggagtcgaag
gacagacatttgagctcaccttaccatcgacgctcctatcacctcacacagaatgacagt
caggacgctggcgctgagcagagtgacccagatgatgaggtggccagcttggcatcatcc
tcaggacattgtggtactcgctcttcccacagattaccagttaaggactggaagacatca
ccacgagcctcgccaaaactaaagcggaagaccaagaaagatgatactgaatcgtctcac
tccaggcaaatggactctagtcagatgaatgctgaagtacaggacgagttgttaatgctc
ctgcgtagccagcagagggagttaactgaactgcgtggacagattgaagctatgcagagc
tccattatggctcaagtagagcacgtccttaccaaccaccaggaacaagaacagcgcaga
atggagcgtgttcttgcagagagtcaaaatcatcagcagcaactccaggaacaactcagc
cagcagcttagccacaccctcggctctgtgctaaccaacagaatggacaaagtgctgcga
gaggaaatgaagaaaacagtcccacaaacaatctctaagagtctggagccagtgacaggt
caactgagcaatacaattgctgctaagctgaccgctgtggaggtcaccctgaaggacaat
gtcaccaaggtggtcaaatcaaagaacacaacggatgcaattggtcgagcagcagctgaa
gcgatgcaggggcccatccaggcggcctataaagacgccttccagagcatcgtgctcccc
gtttttgaaagaggctgccagtccatgttccaacaaatcaacgacagctttaaacaaggc
acacaagaatacatccaacagcttgagacccatatgaagaacaagaagcagagagagcag
gagacacgagaccccatggttggccagctccagcagatgatcgacagtttccaaagctcc
agtgatcagctggcaaataacatcacagccaatgtccgggcagaggtccagcaccagatc
cagatgatggtgggaaatttgcaggaatctattcttagccatgtgcagcgaattgtcaaa
ggtgaggtgagtttggcaatgaaggagcagcaggctgtggtcacctctagcatcatgcag
gcaatgaggtcagcggccggcacgcccgtccccacagcacacctagactaccagacgcag
caagccaatatcctgcagctcctccagcagggccaactcaaccaggctttccagcaggct
ttgtcagcgacagatctgaacttggtcttgtatgtgtgcgagaccatcgactcgcagcag
gtgtttggtcagcacccctgcccgctcagccagcccgttctgctgtcgctcatccagcag
ctctcctccaaccttacaacccgctctgagctcaaaatcagctacctggaggatgcagtg
atgaatctggaccatggcgacccactgacaagagaccacatggccgccgtgttggcccag
gtcagaccgaagctctttgccttcctgcagcaagacccccaaagcccgctgagtaagagg
gcgcggcgcctgatgatgatgctgcagggtctcgtcaaccactag
DBGET
integrated database retrieval system
