Micropterus salmoides (largemouth bass): 119895668
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Entry
119895668 CDS
T07309
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3-like
KO
K14323
protein CASC3
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03013
Nucleocytoplasmic transport
msam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119895668
03015 mRNA surveillance pathway
119895668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119895668
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119895668
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
119895668
NCBI-ProteinID:
XP_038564855
LinkDB
All DBs
Position
Unknown
AA seq
792 aa
AA seq
DB search
MADRRRRRRRASQDSEDDDESGSGSDSGRSGSPATKSRGKEPEPPEPAVTRVEPKSEAES
ECESEDGVGEAVLSDYDSADPEENGSHSEGVEEEEEAEHFSDEEAPAAAASEPKPPAADE
GATKAEVVEEEEQKEQQEQQGGEEGEEEEDVADKEGGGGQSKEETKAEVKGNLAGERQSG
DGQESTDDPETKDGGKPGQKLDDDEDRKNPAYIPRKGLFFEHDVRGHTQEEERPKGRNRK
LWKDEGRWEHDRFREEEQAPKSREELIAIYGYDIRNGGGSGDRSYRQRRPRQSTSPSRDK
RWRDGGERPVRSWHSGGGGGLNRGGAPPPSSPHPSSTPPSSLPLSSAQRGGSSSRPPPSR
NRLSYQNQTHPAPHYRNNESNAPQMHPRERQGPKAQSDPTGDKGGVSRGGGGGGGRGGPS
VVIEDITVSQGGVREQDLSETTTTTASQPGGYKSASPRRQQQEQQGSADRSATGLAASSP
TSDPSLQSSVAATNREASPPTERPVERKSYSAARRTRSRPADLGSKQPSVEESAAAGNAS
SSPSGVGGKSWAGAGDGPSQAGGGGALAELDQDVARLSLAGQSWRQSPTSYVRSEIRGLP
NPIHIPGGPPQFSGIEEIGVGANRAKRYSSQRQRAVPEPAPPMHLGVMDGHYYEPMSYQG
PIYAHGEGPAPIPPQGMLVQPEMHMPHPGLHPHQSGGPIANPALYGGPPVSLSPGQPQQL
LPPPFYPPPGVMTFPYPTMYPTPQGQAQVTYGGVTYYDTMQQQAQPKPSPPRRTSQPVTI
KPPPPELHFASE
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgaaggaggaggcgcgcgtcccaggacagcgaggacgacgacgag
tccggttcgggttcggacagcgggaggtcggggtccccggcgaccaagagccgggggaaa
gaaccagaaccaccggagccggcggtgacccgagtggagccgaagagcgaagcggagtcc
gagtgtgagagtgaagatggagtaggagaagcggttctgtccgactacgacagtgcagat
ccggaggagaacggctcccattcagagggagtggaggaggaagaggaggcggagcatttc
agcgacgaagaagcaccagcggcagcagccagcgagcccaaacccccagctgccgacgaa
ggcgccacaaaggccgaggtggtggaggaggaggagcagaaggagcagcaggagcaacag
ggtggtgaggagggggaggaagaggaggacgtggcagacaaggagggaggaggaggacag
agcaaagaggagaccaaggccgaagtgaaagggaacttggccggagagcgccagagcggc
gacggacaggagtctacagacgaccctgaaacgaaggacggagggaaacccggtcagaag
ctcgacgatgacgaggacagaaagaacccggcctacatcccgaggaagggtctgttcttc
gagcacgacgtcagaggacacactcaggaggaggagagacctaaaggtcgaaacaggaag
ttgtggaaggacgagggtcgctgggagcacgacaggttcagggaagaggagcaggcgccg
aagagccgcgaggagctcatcgccatctacggttacgacatccgaaacggcggcggctcc
ggagaccggtcgtacaggcagcggcggcccagacagagtacgtctcccagcagagacaag
cgctggagagacggaggagagcgtccggtccgatcgtggcacagcggaggaggaggaggt
ctgaaccgaggaggagctcctccgccttcatccccccacccctcctctacaccgccatcc
tcgctccctctctcctctgctcagcgtggcggcagttcctccagaccgcctccctcccgc
aacagactgtcctaccagaatcagacgcaccccgcgcctcactacaggaataatgaatca
aacgcaccccagatgcatccccgggaacgacagggccctaaagctcagtccgaccccaca
ggagacaagggtggagtcagcagagggggcggtggtggcggtggaaggggcggaccctct
gtggtcattgaggacatcacagtcagccaaggaggcgttcgggaacaggaccttagcgag
acgacgacgacgactgcatcacagccgggcggttacaagtctgcatcgccgaggcgacag
caacaggagcagcaagggagcgccgacagatctgcgacaggattggctgcttcctccccc
acctctgacccctcccttcagtcgtcagttgcggcgaccaatcgggaagcctctcctccc
actgagcggccggtggagcgcaagtcttactcggcggctcgccggactcgctctcggccc
gcagacctgggcagcaagcagccgtccgtggaggagtccgcagccgcggggaacgcctcg
tcctcccccagcggcgtgggagggaagagctgggcgggagcaggcgacgggccgagtcag
gcgggaggaggaggggcgctggcagagctggaccaggacgtggctcgactcagtctggca
ggacagagctggcgccagagtccgacgtcctacgtgcggtctgagatcagaggcctcccc
aacccaatccacatccccggcggcccgcctcagttctccggcatagaggagatcggtgtc
ggcgccaatcgggccaaacgctactcctcccagcggcagagggccgtaccggagccggcg
ccgcccatgcacctgggagtgatggatggacactactacgaacccatgtcgtaccaggga
ccaatctacgcccacggggaaggccccgcccccatcccgccgcaaggcatgctggtccag
cctgagatgcacatgccccacccgggtctccatccccaccaatcaggcggcccgatcgct
aaccccgccctctacggaggccctcctgtttctctgtcgccagggcaaccacagcagctg
ctgccgccgccattctaccctccgccaggggtcatgaccttcccctaccccaccatgtac
ccgactccacagggtcaggcccaggtgacctacggcggtgtgacgtactacgacaccatg
cagcagcaggcccagcccaaaccgtcgcccccccgccgcacctcccagcccgtcaccatc
aagcccccccctccggagttgcactttgcctcagagtga
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