KEGG   Micropterus salmoides (largemouth bass): 119895968
Entry
119895968         CDS       T07309                                 
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor
  KO
K20131  Rab5 GDP/GTP exchange factor
Organism
msam  Micropterus salmoides (largemouth bass)
Pathway
msam04137  Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:msam00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    119895968 (rabgef1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:msam04131]
    119895968 (rabgef1)
Membrane trafficking [BR:msam04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab associated proteins
    119895968 (rabgef1)
 Protein recycling
   Other Rab GTPase associated proteins
    119895968 (rabgef1)
SSDB
Motif
Pfam: VPS9 DUF5601 zf-A20 RecG_N PIN_8
Other DBs
NCBI-GeneID: 119895968
NCBI-ProteinID: XP_038565333
LinkDB
Position
Unknown
AA seq 513 aa
MSQRTERRGIHVDQSDLLCKKGCGYYGNAAWQGLCSKCWREEYQRVRQKQIQDDWALAEK
LQREEEAAYANSHGAQTQSQSQSTAPQPHPGHASLGPFSKFEEKKTNEKTRKVTTVKKFF
SPSSRTAPKKEIQDGKTTSPSISRHASFDTDQVSKDFVDFLKNLQKPGREIHKQCRAFLV
NMSSKKDLSAEELSECVQDFYQNLSDRLMSHYKGSSESVEQVMDQVEKYIMTRLYKSVFC
PETSDDEKKDLATQKRIRALHWVTIQMLCVSMDEEIPEVSENVVKAITDVIEMDSKRVPR
DKLGCITRCSKQIFSAIRITKNEPASADDFLPALIYIVLKANPPRLQSNIQYITRFCNPS
RLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSPEDFERYMSGQASPRFNSSEGDWPDTGS
ALGVSATNPVLAQINHNLELLSGLSSRQETLMKSAQSLQADLLSWPEGVQREVHDILEKY
PLEILPRTVSAIDANNVDNDNLPPPLTPQVFAG
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgagtcagcggacagagcgacgggggatacatgtggaccaatcagacctgctgtgcaaa
aagggatgcggttactatggcaacgcagcatggcagggcctttgctccaagtgctggagg
gaggaataccagcgggtacggcagaaacagatccaggacgactgggccttggcagaaaag
ttgcagcgagaggaggaagcagcatatgccaatagccacggagcgcagacgcagtcccag
tcccagtccacagcaccacagccacacccgggacacgcctcgctaggacccttctccaag
tttgaggagaagaagaccaatgagaagacacgcaaagtgaccactgttaagaagttcttc
agcccttcatctcggactgctcccaagaaagaaatccaagacggcaagacaaccagtccg
tccatcagccgccatgccagcttcgatacggaccaagtgtccaaggactttgtggatttc
ttgaaaaacctccagaagcccggacgggagatccataagcagtgcagagccttccttgtg
aacatgtcaagcaagaaggacctgagtgctgaggagctgtcagagtgtgttcaggatttc
taccagaacctgtctgaccgcttgatgagccactataaaggctcttcagagtctgtggag
caggtgatggaccaagtggaaaagtacataatgactcgtttgtataagagcgtattctgc
ccagaaacctctgatgatgagaagaaggacttggccacacagaagaggataagggcctta
cactgggtgaccatccagatgctctgtgtgtctatggatgaagaaatccctgaagtctct
gagaatgtggtcaaagcaataacagatgttattgagatggactcaaagagggttccccgg
gacaaactggggtgcatcacacgctgcagtaaacaaatcttcagtgccattaggatcaca
aagaatgagccggcctcagctgatgactttctccccgcactcatttacattgtgctgaag
gctaaccctccacgactccagtccaacatccagtacatcacccgcttctgtaaccccagc
agactgatgaccggagaggacggatactacttcaccaacctgtgctgtgcggtggctttt
atcgagaagctggacgctcaatctctcaacctttccccagaggattttgagcgctacatg
tcaggccaagcctcaccgcgattcaacagctctgagggtgactggccagacaccggttct
gcacttggcgtatctgccaccaaccctgtcctggctcagatcaaccacaatctggagctg
ctgtcgggcctcagcagccggcaggagacgctgatgaagtctgcgcagagcctgcaggcc
gacctcctctcctggcccgagggtgtacagcgggaggtgcatgacatcctggagaaatac
cctttagagattctgcctcgcacagtttctgctattgatgccaacaacgtggacaatgac
aacctgccaccacccctcacgccccaggtattcgctgggtag

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