Micropterus salmoides (largemouth bass): 119895968
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Entry
119895968 CDS
T07309
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
119895968 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msam04131
]
119895968 (rabgef1)
Membrane trafficking [BR:
msam04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
119895968 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
119895968 (rabgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
RecG_N
PIN_8
Motif
Other DBs
NCBI-GeneID:
119895968
NCBI-ProteinID:
XP_038565333
LinkDB
All DBs
Position
Unknown
AA seq
513 aa
AA seq
DB search
MSQRTERRGIHVDQSDLLCKKGCGYYGNAAWQGLCSKCWREEYQRVRQKQIQDDWALAEK
LQREEEAAYANSHGAQTQSQSQSTAPQPHPGHASLGPFSKFEEKKTNEKTRKVTTVKKFF
SPSSRTAPKKEIQDGKTTSPSISRHASFDTDQVSKDFVDFLKNLQKPGREIHKQCRAFLV
NMSSKKDLSAEELSECVQDFYQNLSDRLMSHYKGSSESVEQVMDQVEKYIMTRLYKSVFC
PETSDDEKKDLATQKRIRALHWVTIQMLCVSMDEEIPEVSENVVKAITDVIEMDSKRVPR
DKLGCITRCSKQIFSAIRITKNEPASADDFLPALIYIVLKANPPRLQSNIQYITRFCNPS
RLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSPEDFERYMSGQASPRFNSSEGDWPDTGS
ALGVSATNPVLAQINHNLELLSGLSSRQETLMKSAQSLQADLLSWPEGVQREVHDILEKY
PLEILPRTVSAIDANNVDNDNLPPPLTPQVFAG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcggacagagcgacgggggatacatgtggaccaatcagacctgctgtgcaaa
aagggatgcggttactatggcaacgcagcatggcagggcctttgctccaagtgctggagg
gaggaataccagcgggtacggcagaaacagatccaggacgactgggccttggcagaaaag
ttgcagcgagaggaggaagcagcatatgccaatagccacggagcgcagacgcagtcccag
tcccagtccacagcaccacagccacacccgggacacgcctcgctaggacccttctccaag
tttgaggagaagaagaccaatgagaagacacgcaaagtgaccactgttaagaagttcttc
agcccttcatctcggactgctcccaagaaagaaatccaagacggcaagacaaccagtccg
tccatcagccgccatgccagcttcgatacggaccaagtgtccaaggactttgtggatttc
ttgaaaaacctccagaagcccggacgggagatccataagcagtgcagagccttccttgtg
aacatgtcaagcaagaaggacctgagtgctgaggagctgtcagagtgtgttcaggatttc
taccagaacctgtctgaccgcttgatgagccactataaaggctcttcagagtctgtggag
caggtgatggaccaagtggaaaagtacataatgactcgtttgtataagagcgtattctgc
ccagaaacctctgatgatgagaagaaggacttggccacacagaagaggataagggcctta
cactgggtgaccatccagatgctctgtgtgtctatggatgaagaaatccctgaagtctct
gagaatgtggtcaaagcaataacagatgttattgagatggactcaaagagggttccccgg
gacaaactggggtgcatcacacgctgcagtaaacaaatcttcagtgccattaggatcaca
aagaatgagccggcctcagctgatgactttctccccgcactcatttacattgtgctgaag
gctaaccctccacgactccagtccaacatccagtacatcacccgcttctgtaaccccagc
agactgatgaccggagaggacggatactacttcaccaacctgtgctgtgcggtggctttt
atcgagaagctggacgctcaatctctcaacctttccccagaggattttgagcgctacatg
tcaggccaagcctcaccgcgattcaacagctctgagggtgactggccagacaccggttct
gcacttggcgtatctgccaccaaccctgtcctggctcagatcaaccacaatctggagctg
ctgtcgggcctcagcagccggcaggagacgctgatgaagtctgcgcagagcctgcaggcc
gacctcctctcctggcccgagggtgtacagcgggaggtgcatgacatcctggagaaatac
cctttagagattctgcctcgcacagtttctgctattgatgccaacaacgtggacaatgac
aacctgccaccacccctcacgccccaggtattcgctgggtag
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