Micropterus salmoides (largemouth bass): 119895992
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Entry
119895992 CDS
T07309
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msam03016
]
119895992 (rtcb)
Enzymes [BR:
msam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
119895992 (rtcb)
Transfer RNA biogenesis [BR:
msam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119895992 (rtcb)
Prokaryotic type
tRNA splicing ligases
119895992 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
119895992
NCBI-ProteinID:
XP_038565373
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLEKLNSNCWRIKKGFVPNMQVEGTFYVNDSLEKLIFEELRNASRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARIMS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggagttacaacgacgagcttcagtacctggagaagctcaacagcaactgctgg
aggattaaaaagggttttgttcccaacatgcaggtcgaaggaaccttctatgtgaacgac
tctctggagaagctgatttttgaggagcttcggaacgcctcccggggaggaggtgtgggc
ggattccttcccgctatgaaacaaatcgggaacgtggcggcgctgcctgggatcgtacac
aggtccatcggtctcccggacgttcactctggatatggatttgcgatcggaaacatggcg
gcctttgacatgaacgaccctgacgccgtggtgtctccaggcggcgttggtttcgacata
aactgcggcgtccgcctgctgaggacgaacctggacgagggagacgttcagccggtgaag
gagcagctggcccagtcgctgttcgaccacatcccagtgggggtcgggtccaagggagtc
atccccatgggggccaaggacctggaggaggctctggagatgggggtggactggtccctg
agggagggctacgcctgggccgaggacaaggagcactgcgaggagtacggcaggatgctg
caggccgaccccaacaaagtgtcctccaaggccaagaagcgaggcctgccgcagctgggg
actctgggagcaggaaaccactacgccgagatccaggtggtggatgagatctacaacgac
tacgccgccaagaagatgggcatcgaccacaaaggtcaggtgtgcgtgatgatccacagc
ggcagcagaggcctcggacaccaggtcgccacagacgctctggttgccatggagaaggcg
atgaaaagagacaagatcacggtgaacgaccggcagctggcgtgcgctcgcatcatgtca
caggaaggacaggactacctgaaggggatggcggccgcggggaactacgcctgggtcaac
cgctcgtccatgaccttcctcaccagacaggccttctctaaggtgttcggcaccacgccg
gacgacctggacatgcacgtcatctacgacgtttctcacaacatcgccaaagttgaggag
cacatggtggacgggaagcagaggactctgctggtccaccgcaaaggatccactcgagct
ttcccccctcaccaccccctcatccccgtagactaccagctgacgggtcagccggtgctg
atcggagggacgatgggaacctgcagctacgtcctgacggggacagaacaaggcatgacg
gaaacattcggcaccacctgtcacggagcgggtcgcgctctgtctcgagccaagtcccgc
aggaacctggacttccaggacgtcctggacaaactggccgacaagggcatcgccatccgg
gtggcttcacccaaactggtcatggaggaggctcctgaatcgtacaaaaacgtgacagac
gtcgtcaacacgtgtcacgacgctggaatcagtaagaaggcaatcaaactgagacccatc
gctgtgattaaaggctga
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