Micropterus salmoides (largemouth bass): 119896016
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Entry
119896016 CDS
T07309
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03013
Nucleocytoplasmic transport
msam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119896016 (upf2)
03015 mRNA surveillance pathway
119896016 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119896016 (upf2)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119896016 (upf2)
mRNA cycle factors
P-body specific factors
119896016 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
119896016
NCBI-ProteinID:
XP_038565408
LinkDB
All DBs
Position
Unknown
AA seq
1288 aa
AA seq
DB search
MTDVCFATTGSMPAERKRLVNMDEKDVCPPSNKEKEKDRDGERKPASARDKTKDEAKMSG
KKDSGKEEKRKRLEEEKKKKEEKERRKKEEEKQKAEEEQKKKEEEEKKQEEEERKLQEEE
AKRQRDEEAALLKEKEEGHQLHQEAWERHHCRKELRSKNQNAQEGRPEEVFFSRLDSSLK
KNTAFVKKLRTLTEQQRDSLSNDFGSLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLF
HQRYAEFAPLLLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYE
QLKNIIGTDRETHTHVSVVISFCKHCGDDIAGLMPRKVKLAAEKFGLNFPPSEIISTEKQ
QPFQNLLREYFTSLTKHLKKDHRELQNTERQNRRILHSKGELSEDRHKQYEEFATSYQKL
LANTQSLADLLDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYE
NLVDLKAFVPAILFKDNEKSGQGKDKDDAKDGREGKDAASTTEELELDLEALDITDEPLE
LEGPDEAENEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDF
CMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFH
IRKKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETCG
RFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPVEKTVKKKRPPL
QEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVKSYLICCMVNIWNVKYNSIHCVANLL
AGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRVSSAKFLGELYNYRMVESAVIFR
TLFSFISFGINPDGSPSSLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQR
YIWWKKSIDVWTKDHPFPIDIDYMISDTLELLRPKMRLSCSLEEATKQVTDLEREVLVKL
GLAMEKDGRSSAMSEGEVLDEEDDDGDDDEEGGAETEEQSGNESEMNEQEEDEGSENEEE
EREEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQ
QRSGETVKVHQLDVAIPLQLKSQLKKGGSGQPCIGEAESEISDTMQFVMLTRKGNKQQYK
ILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANT
NRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtttgttttgctacaactggcagtatgcctgctgaacgcaagcgcttagta
aacatggatgagaaagatgtttgcccccctagtaacaaggaaaaagagaaggacagagat
ggggagagaaaaccggcttctgctcgagacaaaacaaaagacgaagccaaaatgagtggt
aaaaaagacagtggaaaggaggagaagagaaagcgcctggaggaggaaaagaagaagaaa
gaggaaaaggagcgaagaaagaaagaggaggaaaaacagaaagcagaggaggaacagaag
aagaaagaggaggaggagaagaaacaggaggaggaggagaggaagcttcaggaggaggag
gccaaacgacaacgtgatgaggaggcagctctcctgaaggagaaggaggaggggcatcag
ctgcaccaggaggcctgggagcgccatcactgcaggaaggaactccgcagcaagaaccag
aacgcccaagagggtcgtcccgaagaggtcttcttcagccgactggactccagccttaag
aagaacactgcctttgtcaagaagttacgtacacttactgaacagcagcgggactcgctc
tccaatgactttggctccctgaacctcagcaagtacatcggcgaggctgtgagctctgtc
gtggaggccaagctgaagatctctgatgtaggctgcgccgtccacctgtgctccctcttc
caccaaaggtacgctgagtttgctccgttactgttacaggcgtggaagaagcactttgaa
gcgaggaaggaggacaaggcgcccaatgtgagcaagctgcgcacagacctgcgctttatt
gccgagctaaccatcgttggcctcttcacagacaaagagggcctttcgctaatttacgag
cagctgaagaacattattgggacggaccgggagacgcacactcatgtgtcggtggtaatc
agcttctgtaagcactgtggcgatgacattgccggtctgatgccgcgcaaggtgaaactg
gctgctgaaaagttcggcttgaacttccctccgagtgagatcatcagcacagagaagcag
cagcccttccagaaccttctacgggagtacttcacatcactcaccaaacacctgaagaag
gaccatcgggagctgcagaacactgaaaggcagaacaggcgtatcctgcattccaagggg
gagctgagtgaggacagacacaagcagtatgaagagtttgccacttcgtaccagaagctg
ttggccaacactcagtccttggctgatctgctcgatgaaaacatgccagagctgcctcag
gacaagactgtgcaggaggagcacggtcccggcattgacattttcacccctggtaagcct
ggagagtatgacctggagggaggaatctgggaagacgaagacgctcgtaacttctatgag
aacttggtggacctaaaggccttcgtgcctgccatcctcttcaaggacaacgagaagagc
ggccagggcaaagacaaggacgatgccaaagatggcagagagggaaaggacgcagccagc
accacagaggagctggagctggatctggaggctctggacatcacagatgaacctctagaa
ctggagggaccggacgaggcagaaaatgaagaactggccaaaaaattgttggatgagcaa
gaacaagaggatgaagaggccaacacagggtcccacctgaagctaatcgtggacgccttc
atccagcagctccccaactgtgtcaacagagacctcatagacaaggctgccatggatttc
tgcatgaacatgaacaccaaatctaacaggaggaagcttgtccgagccctcttcaccgtc
cccaggcagaggttggatcttctgcccttctactctcggctggtggcgactcttcatccc
tgcatgtcagacgtggccgaggacctctgctccatgctgaagggagacttcaggttccat
attcggaagaaggaccagatcaacattgagacaaaaaataaaacggtcagatttatcggt
gaactggccaagttcaagatgttctcaaagacggacacgcttcattgtctcaagatgctg
ctgtctgatttcacccatcatcatatagagatggcctgtacactgctggagacgtgcggc
cgcttcctcttcagatcccccgactctcacctgcgtaccagcgtcttgctggagcaaatg
atgcgtaaaaagcaggcacagcacctggacgcccgctacgtgacgatggtggagaacgcc
tactactactgcaaccccccacctgtggagaagacggtgaagaagaaaaggccgccgctg
caggagtacatccgtaagctgctctacaaagacctgtccaaggtcaccactgagaaggtg
ctgaggcagatgcgcaagctgccctggcaggaccccgaggtcaagagctacctgatctgc
tgcatggtcaacatctggaacgtcaagtacaacagcatccactgtgtggccaacctgctg
gccggcctggtggcctaccaggaggacgtgggcatccatgtggtggacggagtgctggag
gacatccggctgggcatggaggtcaaccaacctaaattcaaccagcggcgtgtcagcagc
gccaagttcctgggcgagctctacaactaccgcatggtggagtcggctgtcattttccgc
accctcttctccttcatctccttcgggatcaatccagacggcagccccagctcgttggac
cctccggagcacctgttccgcatccgcctggtctgcaccttgctcgatacctgcggccag
tactttgaccggggctccagcaagaggaagctggactgcttcctaatctacttccagcgg
tacatctggtggaaaaagagcatcgacgtttggaccaaggaccacccgttccccatcgac
atcgattacatgatcagcgacaccctggagctgctcaggcccaagatgaggctcagctgt
tccctggaggaggccaccaaacaggtcaccgacctggagagggaggtgctcgtcaaacta
ggtctcgccatggagaaggacggccgctccagtgccatgagtgaaggggaggttctcgac
gaggaagacgacgacggcgacgacgacgaagagggcggcgctgagactgaggagcagtcg
ggcaacgagagtgaaatgaacgagcaggaagaggatgaagggtcagagaatgaggaggag
gagagggaggaagaggaagaagaaaacacagactacctgaccgactccaataaagagaac
gagaccgacgaggagaacaatgaggttaccatccggggcggtggactgaagcatgtggcc
tgcgctgaggacgaggacttcatccaggctctggacaagatgatgctggagaacctgcag
cagcgtagcggcgagacggtgaaggtgcaccagctggacgtggccattcctctgcagctg
aagagtcagctgaagaagggaggctccggacagccgtgcatcggggaggcagagtcggaa
atctccgacaccatgcagttcgtcatgctaacacgcaaaggcaacaagcagcagtataag
atcctgaacgtgccgctgtcatcccaccttgcggccaaccacttcaaccagcagcaggcc
gaacaggaggagcgcatgaggatgaagaaactcacgctggacatcaatgagagacaagag
caggaggactaccaggagatgatgcagtccctcgctcagcgtccggctccggccaacacc
aaccgggagcgccggcctcgctaccagcacccgaaaggcgctcccaacgccgacctcatc
ttcaagactggaggaaggagacgctga
DBGET
integrated database retrieval system
