Micropterus salmoides (largemouth bass): 119896493
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Entry
119896493 CDS
T07309
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119896493 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119896493 (xab2)
03041 Spliceosome [BR:
msam03041
]
119896493 (xab2)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119896493 (xab2)
Spliceosome [BR:
msam03041
]
Complex B
Other components
Prp19-related factors
119896493 (xab2)
Complex C
119896493 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
TPR_MalT
NRDE-2
SNAP
TPR_1
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
119896493
NCBI-ProteinID:
XP_038565866
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPSLNGQTDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKPTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEDDDIDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVDADERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAQAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDDDEDDENQGPEEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaacggacaaactgatgttatgtttgaggacgatgatctgccttatgaa
gaggagattatccggaacccgtactcagtcaagtgctggatgcgttacatcgaattcaaa
cagaacggagcaaaacccaccctcaacatgatatatgagcgggctctgaaagagttgcct
ggcagctataaactgtggtacaattatttgagagagagacggaaacaagtcaaagggaaa
tgtatcactgaaccaggctatgaagaagtcaataattgccatgaaagggcactagtgttc
atgcacaagatgcctagaatatggcttgattactgccagttccttgtgtctcaatgcaag
atcacaagaagtcggcaaacatttgaccgtgcactcagagctctccctgttactcagcac
ccacgcatctggcctctgtatctccgctttgttcgtaacctgcctctgcccgagacagcc
atccgggtgtaccgcaggtaccttaagctttctccagagaatgcagaggaatacatagac
tacttacggtctgttggccgcttggatgaagctgctgtgcggctagcagctgttgtaaat
gacgaaagctttgtatccaaagagggcaagtctaactatcaactgtggcatgagctctgc
gacctgatctcccagaaccctgataaggtgacctctctgaatgtaggagccattatccga
ggaggcctcactcgcttcacagaccaacttggaaaactctggtgctctttagctgactat
tacatcaggagtggtcactttgagaaggcccgggatgtgtatgaggaagccatccttaca
gtcgtaacagtaagggatttcacacaagtgttcgatagttatgcccagtttgaagagagc
atgattgcagcaaagatggagaccactgctgagatggggcaggatgaagacgatgacata
gacatggagcttagactggcccgctttgagcagctgatagcccggcggccactcttgttg
aacagtgtgctactgcggcagaaccctcataatgtccatgagtggcataaacgggtaaaa
ctgtatgagggtaatccacggcagatcatcaatacatacactgaggcagtacagactgtg
gatccaatgaaggctacagggaagcctcattctctctgggtttccttcgctaaattctat
gaggaaaatgagcagctggatgatgccaggacaatttttgagaaggctaccaaggtgaac
tacaagcaggtggatgaccttgctgctgtgtggtgtgaatatggagagatggagctacgc
catgagaactatgaacaggcactgcgaatactgaggaaagctacagccattccatccaag
aaagctgagtactttgatgcatctgagccagtccaaaaccgagtctacaagtccttgaag
gtctggtctatgctggcggacctggaggaaagtcttggcactttccagtctacaaaagca
gtgtatgaccgcattattgacctccgcatcgccacgccacagatcatcatcaattatgcc
atgttccttgaagagcacaactactttgaggaaagcttcaaagcatatgagcgtggcatc
gctctcttccggtggccaaatgtgtatgacatctggaacacgtacctcaccaagttcatt
gatcgttatgggggcaagaagctggagagagctagagatttatttgaacaagccctggat
ggctgccctcccaagtttgctaagaccatttacctgttgtatgccaaattggaggaggga
tatggattggcacgacacgccatggctgtctatgaaagagcaacgcaggcagtggacgct
gatgagagacatcacatgtttaatatctacataaagagagcagctgaaatttatggagtc
acatataccagagcaatttaccagaaagctattgaggtccttcctgatgagcatgcgagg
gacatgtgtctgcgttttgctgacatggagagcaaactgggtgagattgatcgggccaga
gcaatctactcctactgctcccagatctgtgaccccagggtgactgctaatttctggcag
acctggaaagaatttgagatccgccatggaaatgaagacacaattagagaaatgctacgg
atcaaacgtagtgtccaggccacatacaacacccaggtcaactttatgtcctctcagatg
ctgaaggccacaacaagctccacaggcaccgtgtcagatcttgctccaggccaaatggga
attgatgacatgaagatgctggagcagaaagcacagcagcttgctgcacaggctgagcaa
gacaaacccaagcccaaagagaagattctgtttgtcaggagtgacacctctcgcagtgag
ttggctgagctttccaaacaagccaatcctgatgagatcgacattgatgatgatgacgat
gaggatgatgaaaaccagggaccagaggaggtgcagcttgaacagaagagtgtccccaca
gctgtctttggagggctgaaagatgactga
DBGET
integrated database retrieval system
