Micropterus salmoides (largemouth bass): 119897203
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Entry
119897203 CDS
T07309
Name
(RefSeq) basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X1
KO
K06749
sialic acid binding Ig-like lectin 10
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
119897203
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
msam04091
]
119897203
Lectins [BR:
msam04091
]
I-type lectins (Siglecs)
119897203
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
Ig_6
C1-set
C2-set_2
Adeno_E3_CR1
V-set_CD47
TPK_B1_binding
LapA_dom
Motif
Other DBs
NCBI-GeneID:
119897203
NCBI-ProteinID:
XP_038566720
LinkDB
All DBs
Position
Unknown
AA seq
997 aa
AA seq
DB search
MLLHKEGSGRTAMRGRVGLDKSHTVEIAVERRVKGNKKNRDRILYCGGRDCLSHQSRMFV
LIWATLFFTVWNDNPVLSQQPTLTTPPMTGGQETKLTCTAPGLCSESDLKITWMWRGRGE
HNSHITGNITANQGKNSTLTFISSAEHHATEVTCRVSCTNDMAEQNVTLNVTYVKKPEIT
GNATLKEGDTLTLTCSVESFSPSRIINKTLLNETIKEKNYNVKAPLIIHNVTAEHSGQYI
CTAEYLGNSLAEHINVTVTYVKKPKITGNSALKEGDTLNLTCSVESFSPSRITWTKLGSN
ETLLNETIKEKNYNEKAPLIIHNVTAEHSGQYICTAEYLGNSLAEHIIITVTYVKKPKIT
GNSALKEGDTLNLTCSVESFSPSRITWTKLGSNETLLNETIKEKNYNKKAPLIIHNVTAE
HSGQYICTAEYLENSLAEHMNVTVTYVKKPKITGNSALKEGDTLNLTCSIESFSPSRIMW
TKLGSNETLLNETIKEKNYNEKAPLIIHNVTAEHSGQYICTAEYLGNSLAEHINVTVMYV
KKPEITGNSALKEGDTLNLTCSVESFSPSRITWTKLGSNENLLNETIKEKNYNEQAPLII
HNVTAEHSGQYICTAGYLGNSLAEHINVTVMYVKKPEITGNSAPKEGDTLNLTCDVDSVP
PSVIMWSKLGLNNNLTGLVQQGAGMAILVIPNMTAEYSGQYLCTATHQTKILKEGVNISV
ILYPKILNSSGCINQSEGLTCMCISQGVPVPTIKWPLLENHTEYTRIITVSNHTVNSTVT
LTVKDYSNTVVECVSYNRNGEVKENLIIKNIEQKEEGQPMKLIRFMTRLEIIIAFLIGVL
ISGVICCLTRKCHRQKKKTCGNVAETLLMVTSHKDSLTDAGHAVEDYQAIYQEAAEVEGG
AVAAEKSDTDYSNINFSLIKRKIAAKAGTTRGTTETEYAEIKKEKTEARQDGEDKEEEDM
IGEDKERKHCVPDEQEGEDVALYSSVKDIIKFEHSVV
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgcttttgcacaaagaaggaagcggtagaacagcgatgagaggaagagtcggtttagat
aaaagtcacacagttgagatcgctgtggagagaagagtgaaagggaacaagaaaaacaga
gacaggattttatactgtggagggagagactgtctcagtcatcaaagtaggatgtttgtt
ctcatctgggcgactctgttcttcactgtgtggaacgacaatccagttctgagtcagcag
cccacgttgacaacccctccaatgacagggggacaggagaccaaactgacctgcacggct
cctggtctctgctctgaatctgatcttaaaatcacctggatgtggcgaggaagaggagag
cacaactctcatatcacaggaaacatcacagccaatcaaggaaaaaactcaactttgacc
tttatctcttcagctgaacaccacgctacagaggtcacctgcagggtcagctgcacaaat
gacatggcagagcagaacgtgactctgaatgtaacctatgttaagaaacctgaaatcact
ggaaatgctactctaaaggagggtgatactctgactctgacctgcagcgttgaaagcttc
tctccatcccgtatcatcaacaaaaccctgctcaatgaaaccataaaggaaaagaattac
aacgtaaaggctcctctcatcatccacaacgtgacagcagaacattctggacaatacatc
tgtacagcagaatacctgggaaactctctggcagaacacattaatgtaacagtgacgtat
gtcaagaaacctaaaatcactgggaattcagctctaaaggagggtgatactctgaatctg
acctgcagcgttgaaagcttctctccatcccgtatcacgtggactaaacttggctctaac
gaaaccctgctcaatgaaaccataaaggaaaagaattacaacgaaaaggctcctctcatc
atccacaacgtgacagcagaacattctggacaatacatctgtacagcagaatacctggga
aactctctggcagaacacattatcataacagtgacgtatgtcaagaaacctaaaatcact
gggaattcagctctaaaggagggtgatactctgaatctgacctgcagcgttgaaagcttc
tctccatcccgtatcacgtggactaaacttggctctaacgaaaccctgctcaatgaaacc
ataaaggaaaagaattacaacaaaaaggctcctctcatcatccacaacgtgacagcagaa
cattctggacaatacatctgtacagcagaatacctggaaaactctctggcagaacacatg
aacgtaacagtgacgtatgtcaagaaacctaaaatcactgggaattcagctctaaaggag
ggtgatactctgaatctgacctgcagcattgaaagcttctctccatcccgtatcatgtgg
actaaacttggctctaacgaaaccctgctcaatgaaaccataaaggaaaagaattacaac
gaaaaggctcctctcatcatccacaacgtgacagcagaacattctggacaatacatctgt
acagcagaatacctgggaaactctctggcagaacacattaatgtaacagtgatgtatgtc
aagaaacctgaaatcactgggaattcagctctaaaggagggtgatactctgaatctgacc
tgcagcgttgaaagcttctctccatcccgtatcacgtggactaaacttggctctaacgaa
aacctgctcaatgaaaccataaaggaaaagaattacaacgaacaggctcctctcatcatc
cacaacgtgacagcagaacattctggacaatacatctgtacagcaggatacctgggaaac
tctctggcagaacacattaatgtaacagtgatgtatgtcaagaaacctgaaatcactggg
aattcagctccaaaggagggtgatactctaaatctgacctgcgatgttgacagtgtccct
ccatctgttatcatgtggtctaaactcggcttaaacaacaacctgactggacttgtccag
cagggtgctggaatggccatacttgtcatccctaacatgacagcagaatattctggacag
tacctctgtacagcaacacatcagaccaaaatcctgaaggaaggagtaaacatatcagtg
atattgtatccaaagatcctaaacagctcaggatgcataaatcagtctgagggtctgact
tgcatgtgtatcagtcagggggttcccgttcccaccatcaaatggccgctgttggagaac
cacaccgagtacactcgcattatcactgtgtcaaaccacacagtcaacagcacagtcacc
ctaactgtaaaagactacagtaacactgttgttgagtgtgtcagctacaatagaaatgga
gaagtaaaagagaacctcatcataaaaaacatcgaacaaaaagaagaaggtcaacccatg
aaattgataagatttatgacacggctggaaataatcattgcatttttgattggcgttctt
atttctggcgtcatttgttgtttgacaagaaaatgccacagacaaaaaaagaagacctgt
ggaaatgtggctgagactctgctgatggtgacaagtcacaaggattctctgacagatgct
ggtcatgcagtggaagattatcaggccatctaccaagaggcagctgaagtagaaggagga
gctgtggcggcagagaaatcagacacggactactccaacattaatttctccctgattaaa
agaaagattgcggcaaaggcagggacaacacgtgggaccacagagacagagtatgctgaa
attaaaaaagaaaaaacagaggcgagacaagatggagaggacaaagaggaagaggatatg
ataggtgaggataaggagagaaaacattgtgtaccggatgagcaggaaggggaggatgtg
gcactgtattccagtgtgaaggatataatcaaatttgagcacagtgttgtttag
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