Micropterus salmoides (largemouth bass): 119897523
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Entry
119897523 CDS
T07309
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119897523 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119897523 (cnot3a)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119897523 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119897523 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
Motif
Other DBs
NCBI-GeneID:
119897523
NCBI-ProteinID:
XP_038567212
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEELKRLIERHRFHI
RMLETILRMLDNDSIPVDSIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPTALVA
TSPSGQGNVEDEMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGTPSLLSSFSSSSTTSGSSSSSSLVSMASVVGGISAIPTSSSLIGSFSSAVQQHQHQ
PAQQQQPQPANQPQQQQQQQQQPPPQTKPSVPSNTPSPPSNPLLPASTAPPLPTPSTPIS
SASNSQPTSGPSPASSLGLGLGLGLSKIGMTGTSSANQQMPGLGLGGHPSPLNTMAGLIS
GSTPAPYAQAAASGALGLSSTTQSSISVESSTSIPTSGSSGVTTNGAGTGLGLLGSSPAH
NSLSGSILSLVPGQNVAPSASQVPPSSVSTTPGVVGLMGGNGGNVSVVGGVGVNAAPARP
PSGLKQNGSTSYSAVVAESSTESALSTPSQSQSSQPSSLSSSTSQPMDNGPSLISSITLP
PSSPSPSFSDSTPGGGSLLNGPHSYTQASEALKAPEPLSSLKAMAERAALGSGLDGEIPN
LHLTDRGRNDIFSGSSAAPGTPAAPQPSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQE
SAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLE
GTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEG
FTFEYRYLEDRDLQ
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactacaaggtgagatcgatagatgtttgaaaaaagtagctgag
ggtgtagaacagtttgaagacatctggcaaaagctccacaatgcagccaatgcaaaccag
aaggaaaagtatgaggctgacctcaagaaagagattaaaaaactacagcgattgagagat
caaataaaaacatgggtggcctcaaacgagatcaaagacaaaaggcagctagtcgagaat
cgcaagcttatagagacgcaaatggagcggttcaaggtggtggaacgggaaacaaaaaca
aaagcttactctaaagaaggcttggggctcgctcagaaagtggatccagctcagagggaa
aaggaggaaacgggacagtggctaacaaatacaatagacactctaaatatgcaggtggat
cagtttgaaagtgaggtggagtctctttcagttcagacgagaaagaagaagggtgataaa
gacaagcaagatcgtattgaagagctcaagcggttgattgaaaggcatagattccacatt
cgtatgttggagaccattttacgaatgcttgacaatgactcaataccagtggattcaatc
cagaagatcaaggatgatgttgaatactacattgattcctcccaagacccggactttgag
gagaacgagttcctgtatgacgacttagacctggaagacatccctacagcattagttgcg
acttctccgtcaggtcagggcaatgtggaagatgagatgtatctccactccagcagcact
ccaacttccaccacctcctcttcacccattcctccatccccggccacttgcactgctgag
aactcagaggacgataagaaaaggggacggtcgacagacagtgaagttagtcagtcacct
gtgaagaacggcaccccatccttgctatcttccttctcttcctcctccaccacctctggg
tcctcgtcgtcgtcctcccttgtgtccatggcgagcgtagtcggaggtatttctgcgatt
cccacaagcagcagtcttatagggagcttcagcagtgcagtgcagcaacatcagcatcaa
cctgcgcagcagcaacaacctcagccagccaaccaaccgcagcagcagcagcagcagcag
cagcagccgccacctcagacaaaaccctcagtcccctcaaacacccccagcccgcccagc
aaccctctactcccagcctcaactgccccccctctccccacacccagcacacccatttca
tcagcttccaactctcagcccacatctgggccctccccagcatccagtttaggactcggg
ctggggctgggattgagcaaaattggcatgacggggaccagcagtgccaatcaacaaatg
cctggtttaggcctggggggtcacccctctcctttaaacacaatggcagggctcatttca
ggctcaacacctgccccttacgctcaggcagcagcatcaggagccttgggtttgagcagc
accacccagtccagtatttcagtggagagcagcacttccatccccacctctggctccagt
ggagtcaccaccaacggggcggggacagggctcggtttgctgggttccagcccggcccac
aactctttgagcgggagcattttgagtctagttcctgggcaaaatgtagcccccagtgcc
tctcaggtgcccccaagttctgtcagcactactcctggagtagttggcctgatgggaggc
aatggagggaatgtcagcgtggttggaggagtaggggtgaatgcggctcctgctagacca
cccagcggacttaagcaaaatggaagcacaagttacagtgctgtagtggcagagagctcc
acagaatcagctctaagcacaccgagccagtcacaaagcagccagccttcatctctcagt
tcttcaaccagtcagccgatggacaatggtcccagtttaatcagctccatcaccctgcct
cccagctctccgtccccctcattctcagacagcacacccggaggaggcagtcttctcaac
gggccccactcctacacacaggcctctgaggccctcaaggcccctgagccactcagttct
ctgaaggcgatggctgagagagcagcgctgggatcaggcctggatggagaaattcccaac
ctgcacctaacagacagaggtcggaacgatatcttctctggatcatctgcagcgcccggc
acacccgccgcccctcagccgtccgtgtcggaagtcagcattcccccttcgctcggggtc
tgtccacttggccccacccctctccccaaagaccagctctaccagcaggccatgcaggag
tccgcgtggacacacatgccacacccctccgactctgagaggatcaggcaatacctgatg
aggaatccgtgtcccaccttgcccttccatcatcagataccgccgcaccactcggactcc
atagagttctaccagagactgtccacagaaacactctttttcattttctactacctggag
ggcaccaaggctcagtatctgtctgccaaggctttgaagaaacagtcgtggaggtttcac
accaagtacatgatgtggttccagaggcacgaagagcccaagactatcactgacgagttt
gaacagggcacttacatttactttgactatgagaaatggggccagaggaagaaggagggg
ttcaccttcgagtacaggtacctcgaagacagagacctgcagtga
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