Micropterus salmoides (largemouth bass): 119897844
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Entry
119897844 CDS
T07309
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
msam00535
]
119897844
Proteoglycans [BR:
msam00535
]
Extracellular matrix (ECM) proteoglycans
Others
119897844
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
VWA_3
DUF4959
Mid1
Motif
Other DBs
NCBI-GeneID:
119897844
NCBI-ProteinID:
XP_038567764
LinkDB
All DBs
Position
Unknown
AA seq
1782 aa
AA seq
DB search
MLSDGQIRWCMWAPLVLLALVSHFPSKAQGQVPAPRRLRFKVLSSSKLLISWKEPKGDFD
SYLFLYNSIPGGQQREIIVSKSDTKVLITDFNPSKDYTVSVIAVSGSEQSRPLQGRHKAE
RGESGGRDKTEPQRQTDSVVPPEDANEISGVDQFVCHTEAIADIVILVDGSWSIGRLNFR
LVRMFLENLVNAFDVGFDKTRIGLAQYSGDPRIEWHLNAFSTKDAVIDAVKNLPYKGGNT
LTGLALTYILENSFKPESGSRVSIPKIGILITDGKSQDDVIPPAESLRNAGVELFAIGVK
NADENELYSIASEPXNTHVYNVADFNIMSSIVEGLTKTVCEQVEQQDKDIKQKQTPETIG
APLDLVTSEVGARSFRVSWSHAPGSVEKYRVVYYPAQGGEPQEAVVDGSETSVVLQHLSS
FTKYQLAVFAVYANEASEALRGSETTLALPTVTGLELFDVTHNTMKARWDRIDGVSGYML
LYAPLTEGADLDEKEVRVSDAVTELELERLIPHTEYTVTVYAMYGEEAGDPVSNQETTLP
LSPPSNLQFSDVTHNSAHISWDPVPREVKGYRIVWIKTDGLVAKEVVVSGGNSYDLYDLS
PLMEYSVAIYTVYDEDQSEPLTDRFTTTPVPGPMNLNSNDVSTDSFQVSWDHSANDIVLY
RLSWAPLAGGDTKEVVLSGSDNRYILNGLSPSTEYEVMLTAVFKDESESDTVSVTETTLA
KTTTIATTTTVARQAVRNLQLSDETTQSLEASWELDDPHVESYRVSYAGLRGDREEESVL
VPGGQRRAVLEPLLSDTQYKVTVTPVYNDRQDGISVSALGSTLPLMSPGNLRVSEEWYNR
FRVTWDPPQSPTVGYRIVYQPIYVPGPLLETTVGEDVNTMLLLNLLSGTEYSVQVTASYP
TGQSEPLLVNAKTLFLGVSGLSTYQVRPNSICVQWQPLLHATXYTVFIQSTLNGQKQEVS
LGGGASRQCFYDLTPSSQYQISVHTQLQEMEGPSVSITDMTLPAPTQAPTEPPTTEPPPT
IPPPKEVCKEAKADLAFLVDGSWSIGDXNFMKITRFLYSTMGSLDLIGPDGTQVAIAQFS
DDARTEFKLSSHGNKEALLEAIQRIRYKGGNTKTGRAIKHVKESIFTAEAGARRGIPKVL
VVLTDGRSQDDVNKVSKEMQMDGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLDAV
KKIEEQLITFVCEAATATCPSVLMSGNTMAGFRMMEKFSLVEKEYSTIPGVSLEPGSFNS
FPCYRLHRDALVSQPTKYLHPEGLPSDYTISMMLRLLPETPQEPFALWEILNKDNEPLVG
LILDNSGKTLTFFNNDYKGDFQTITFEGTEIKKLFHGSFHKLHVTISKTSVKVVLDCSVV
GEKSINAAGNITTDGVEILGRMVRSRGRRDNSAPFQLQMFDIICSTSWASRDKCCELPAL
RVEEQCPPMPHACTCSQDSKGPPGPSGPPGGPGIRGARGDRGEPGVTGPQGPVGEIGPPG
PSGPPGPQGPSGLSIQGPPGPAGEKGERGEIGPAGHMGVPGSPGSLGRDGPPGARGLPGN
NGPQGRQGPPGPVGAPGAPGAPGSGGSAGPQGDQGPPGPAGTKGDKGERGDVQSQAAVRA
IARQVCEQLIQSHLSRYNSILNQIPSQSSVSVRTVPGPPGEPGRTGPPGPQGEQGPPGRP
GFPGSNGQNGQPGERGLPGEKGERGNPGIGSQGPRGPPGPPGLPGEGRTGSQGPPGRPGS
PGTPGRPGNPGSTGPAGSPGYCDQNSCIGYNVGVQQDYGNDY
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atgttgtcagatgggcagattaggtggtgtatgtgggctccactggtgttactggccctt
gtttcgcatttccccagtaaggcacagggtcaagttccagccccgaggagactgcgtttc
aaagtcctgagctcaagcaagcttctcatttcatggaaggagcccaaaggagactttgac
agctatctattcctctacaacagtataccaggtggtcagcagagggagatcatagtatcg
aaatctgacactaaggtgttgataacagacttcaacccctctaaggactatactgtcagt
gtcatcgctgtcagtggcagtgagcagagcagaccactacagggcagacataaagctgaa
agaggtgagagtggcgggagagacaagactgagccccagaggcagactgattcagttgta
cctcctgaggatgccaacgagatctctggagttgatcagtttgtgtgccacactgaggcc
attgctgacattgtgattctggtggacggctcctggagtattggccggctcaacttccgg
ttggtccgcatgttcttggaaaaccttgtcaatgcctttgatgttggcttcgataagaca
aggataggtctggctcagtacagcggtgatcccaggatagagtggcatctaaatgctttc
tccactaaagatgctgtcattgatgctgtcaagaacctgccctacaagggaggaaacact
ctcacaggccttgcgttgacatatatcttggagaacagtttcaagcccgaatctggctcg
cgggtcagtattcccaaaatcgggatcctcatcacagatgggaagtctcaggacgatgtc
ataccacctgcggagagcctgcgaaatgctggtgttgagctgtttgctattggtgtgaag
aatgccgatgagaatgagttgtactccatcgcctcagagccgnccaacactcacgtctat
aatgtggctgacttcaacatcatgagctccatagtagagggactgaccaaaacagtgtgt
gaacaagtggagcaacaagacaaggacatcaagcagaaacagacaccagagacgataggg
gcaccactagacctggtgacatcagaagtgggggccagaagctttcgggtttcatggagc
cacgcccccggaagtgtagagaaatacagagtggtttattaccctgctcagggaggagaa
ccacaggaggctgtagtggatggtagtgagacttcagtggtgttgcagcacctcagctct
ttcaccaagtaccagctggctgtgtttgctgtgtacgcaaatgaggcaagtgaggctctg
agaggatcagaaacaaccctggccctgcccacagtgacggggctcgagctgtttgatgtg
actcataacactatgaaagcaagatgggacaggattgatggagtctccgggtacatgcta
ctgtatgcaccgcttacagagggagcagacttggatgagaaggaggtcagggtatcagat
gcagtgacagagctggagcttgagaggttgatccctcacactgaatacaccgtcactgtt
tatgccatgtacggggaggaagccggtgatcctgtttcaaaccaggaaactacattacca
ctgagtcctccaagcaacctccagttctctgatgtcactcacaactccgcccacatcagc
tgggaccctgtgcccagagaagttaaaggttaccgcatcgtgtggatcaagacagacgga
ctagtcgcaaaggaggtggtggtgagtggtgggaactcctatgacctttatgacttgtcg
cctctgatggagtactcagtggccatctataccgtgtacgacgaggaccaatcagagcca
ctcacagacagattcactaccactccagttcctggtcctatgaatctgaactccaatgat
gtcagcacagacagcttccaggtcagctgggatcactctgccaatgacatcgttctctac
agactctcctgggcaccgttggcaggtggcgacacaaaggaggtggtcttgagtggaagt
gataacagatacatcctgaacggtctgagtccgtctactgagtatgaagttatgttgaca
gctgtattcaaagatgaatctgagagtgacaccgtctctgttacagagaccacattggcc
aagacaacaacgattgctaccacaaccacagtggcgcgccaggctgtgaggaaccttcag
ctgagtgacgagaccacccagagcttagaggcatcatgggagctggacgaccctcacgtg
gagagttacagggtctcctatgccggcctcaggggcgaccgcgaagaggagtctgtgtta
gttcccggtggtcagaggagagcagtgcttgagcctttactatcagacacccagtacaaa
gtgacagtcacaccagtgtacaacgacagacaagacggcatcagtgtctcagccctgggt
tccacattgccactcatgtctcctggaaacctacgtgtgtcagaggagtggtacaaccgc
ttcagggtcacctgggatccacctcagtctcctacagttggttacaggatcgtctaccag
cccatctatgttccaggaccacttttggagacaacagtgggtgaagatgtgaacaccatg
ctcctcctgaatctactaagtgggacggagtacagtgttcaagtgacggcttcctacccg
acaggacaaagtgaaccactgctagtaaatgcaaagacattgttcctcggtgtctctggc
ttgtcaacctaccaggtgcgtcccaacagcatttgtgtccagtggcagcctcttctacat
gccacgnnttatacagtcttcatacagtccacactcaatggtcagaagcaggaagtcagc
ctgggaggtggtgcttcccgacagtgcttctatgacctcactccaagcagccaataccag
atcagcgttcacacccagctgcaggaaatggagggaccttctgtttccatcactgacatg
acattgccagcgcccactcaagctccgactgaacccccgacaacagagccccctcccacc
atcccacctcctaaagaggtgtgtaaggaggccaaggctgacctggctttcctggtcgac
ggttcctggtccatcggagacnngaacttcatgaagatcacgcgtttcctctacagcact
atgggatcgctggatctgattggaccagatggaacccaggtggccatcgctcagttcagt
gacgatgctcggaccgaatttaagctgagttcccatggcaacaaggaagcgctgctggaa
gctattcaaaggatcagatacaagggaggaaacaccaagacaggtcgggccatcaaacat
gtgaaggagtctattttcacagcagaggccggggctagaaggggcattccaaaggtcctg
gttgttctcactgacggacgatcacaagatgatgtcaacaaagtgtccaaagagatgcag
atggatggctatatcatctttgccattggctttgcggacgcagactacggggagctggtg
aatattgccagtaagcccagtgacagacatgtcttctttgtggacgatttggatgctgtg
aagaaaatagaagagcagctcattacttttgtctgtgaggctgccactgccacttgtccg
tctgttttgatgagtggtaacacaatggcaggtttccgtatgatggagaagtttagccta
gtagaaaaggagtacagcaccatacctggagtttctctggagccgggctcattcaatagc
ttcccctgttacagattacaccgtgacgccttggtgtcacagcccaccaagtaccttcac
ccggaaggtttaccctctgactacaccatttctatgatgctccgcctacttcctgagacc
ccgcaggagccctttgcattgtgggaaatcctcaacaaggacaacgagccattggtggga
ctgatcctggacaactctggaaagaccttgacattcttcaataacgactacaaaggagac
ttccagaccatcacttttgaaggaactgaaataaaaaaactcttccatggcagcttccac
aagctccatgtaactatcagcaagacatctgtgaaggtggtgttggattgttctgtggtt
ggagagaaatccatcaatgctgctggaaacattaccaccgatggagtggagatcctcgga
aggatggttcgatccagaggaagacgggacaactctgctccattccagctccagatgttt
gacatcatctgcagtacatcctgggccagcagagataagtgttgtgagcttccagcattg
agagttgaggagcagtgcccccccatgcctcatgcctgtacctgctcccaggacagcaaa
ggacctccaggaccttctgggccccctggcggaccaggcataaggggagccagaggagac
agaggagagccaggagtgacgggacctcaagggccagtgggagagattggccctcctgga
ccctcaggaccgcctggtcctcagggacccagtggtctctcaattcagggacccccgggt
cctgctggggagaagggagagagaggagagatcggtccagcaggacacatgggtgttcct
ggaagcccgggctcccttggtagagacggtcctccaggagcaaggggtctgcccggtaat
aatggaccacagggacggcaaggacctcctggacccgttggagcaccgggagcaccagga
gctccaggatctggtgggtcagcagggccccaaggagatcaaggacctcctggtcctgct
ggtaccaaaggcgataagggagaacgaggtgatgtgcaatcccaggctgctgtgcgtgca
attgcacggcaagtgtgtgaacagcttatccagagccacttgtctcgctataactccata
ctgaaccagatccccagccaatcgtcggtgtcagtccgaacagtacccggaccaccagga
gagccgggaaggacaggccccccaggacctcagggagagcaaggcccacccggcaggcca
ggcttccctggtagcaacggccagaacggacaaccgggagagcgaggtctgccgggagag
aagggtgagagggggaatccaggcattgggagtcagggacctcgaggaccacccggacct
ccaggtctgccaggtgaaggacggacaggcagccagggcccccccggtcggcctggaagc
ccggggacaccggggaggccggggaatccaggtagcacaggaccagctggctcaccagga
tactgtgaccagaactcctgtattgggtacaacgttggagttcaacaggactatgggaat
gattactga
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integrated database retrieval system
