Micropterus salmoides (largemouth bass): 119898044
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Entry
119898044 CDS
T07309
Symbol
dcaf13
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msam03009
]
119898044 (dcaf13)
04121 Ubiquitin system [BR:
msam04121
]
119898044 (dcaf13)
Ribosome biogenesis [BR:
msam03009
]
Eukaryotic type
90S particles
Other 90S particles
119898044 (dcaf13)
Ubiquitin system [BR:
msam04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
119898044 (dcaf13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sof1
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
ANAPC4_WD40
eIF2A
KNTC1_N
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_NUP159_NUP214
Beta-prop_WDR19_1st
MIOS_WD40
Beta-prop_IP5PC_F
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
119898044
NCBI-ProteinID:
XP_038568087
LinkDB
All DBs
Position
Unknown
AA seq
445 aa
AA seq
DB search
MKVKVLSRNPDNYVRETKLDIQRVPRNYDPTLHPFEVSREYTRALNATKLERVFAKPFLA
SLDGHRDGVNCMAKHTQSLSTLLSGSCDGEVRVWNLTKRECVRTLQAHEGFVRGMVVRYC
GTSFFTVGDDKTIKQWKMEAPGYGEEEEPLNTILGKTVFTGLDHHQREGVFATCGQQVDI
WDEQRSSPVRSFTWGVDSFSSVRFNPVETELLASCASDRSVVLYDMRESAPLKKVIMTMR
SNTLCWNPMEAYYFTCANEDYNLYTYDMRYLDRPVTVHMDHVSAVLDLDYSPTGKEFVSG
SFDKTIRIFPKDSGHSREVYHTKRMQHVICIKWSADNKYILSGSDEMNIRLWKANAAEKL
GVLAPREREAINYSQKLKEKFQHHPQIRRIARHRHLPKNIYHQSKELRIMKEARRRKEKN
VRMHSKPGTVPVVSEKEKHVVTVVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttaaagtcctctcgaggaacccggataattatgtccgggagaccaaactggat
attcagcgtgtccctagaaactatgacccaacactccatccttttgaggtgagcagagag
tacacccgggctctcaatgctacgaagcttgaaagggtgtttgccaagcctttcctggcc
tctctggatggacacagagatggggtgaactgcatggccaagcacacccagagcctctcc
accctgctctctggctcctgcgacggggaggtgagagtgtggaatctgaccaaacgtgaa
tgtgtccgcacgcttcaggcacatgagggttttgtccggggaatggttgtccgttattgt
ggaacgtccttctttacggttggcgatgacaaaacaatcaagcaatggaaaatggaggca
ccaggttacggcgaggaagaggagccgctcaacactattctgggcaagacggtcttcaca
ggactggaccatcaccagagggagggtgtgtttgcaacgtgtggccagcaggtggacatc
tgggacgagcagaggagcagcccggtccgctctttcacctggggcgtagacagcttcagc
tctgtccgcttcaaccccgtggagactgaacttcttgcaagctgtgcctctgacagaagt
gtagtgctgtatgacatgagagaatcagcgccacttaaaaaggttattatgacaatgagg
agcaacacattatgctggaacccgatggaagcctattacttcacctgtgcaaatgaggac
tacaacctctacacatatgacatgaggtacctggaccggccagtcacagtgcacatggac
catgtctctgcagtgctggatcttgactattctcccactgggaaggaatttgtatctggc
agttttgacaaaaccatccggatcttccccaaggacagtggtcacagcagggaagtctac
cacaccaaacgcatgcagcacgtcatctgcataaagtggtcagcagacaacaaatacatc
ctgagcgggtccgacgaaatgaacatccgactgtggaaagccaacgcagctgagaagtta
ggagtgctggcccccagagagagagaggccatcaactacagtcagaagctgaaggagaag
ttccagcaccacccacagatcagacgcatcgctcgccaccgacatctacccaagaacatc
taccaccagagcaaggagctgaggattatgaaagaggctcgccgtaggaaggagaagaat
gtccgcatgcacagcaaaccaggaactgtccccgtggtgtctgagaaggagaagcatgtt
gtgactgtggtcaaatag
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