Micropterus salmoides (largemouth bass): 119898688
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Entry
119898688 CDS
T07309
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119898688 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119898688 (parn)
Enzymes [BR:
msam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119898688 (parn)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119898688 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
119898688
NCBI-ProteinID:
XP_038568809
LinkDB
All DBs
Position
Unknown
AA seq
683 aa
AA seq
DB search
MEVTRRNYKDSLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYKKLKKH
SMDFLLFQFGLCTFKYDQAKSKYVIKPFNFYIFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFCNGIPYLNQEEEAQLREQTEERRNQHANGVGTPSYISPSSSKGPAHVPEEHKD
FINRVIEKVEALFTNSEKTLELEPCTGFQRKLIYQTLNWKFPKGLHVETIETEKKERYIQ
VSKVDDEERKRREQQKLEKEQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLQDFKEVTMCVFPRLLDTKLMASTQPFKELITNTSLAELEKQLKETPFKSPQV
ETAEGFHSYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISARSKLIEPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGKQQDKEKLGQTTKSWGEDGWAKSHY
TSTTSCGYGYPRGLRKRSISPVQGEHEAGEALIADGWSHYSYPDSTGSKKMKTDDISGQA
NAEAVESKTSEGWLKTADSSDSAGLSLVPDEEEGPEPTDPANDAEGTVTWQQASTVHRRK
GQKKKKTEGAESTTSLFEVPEVW
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgcagaaattataaagacagtttaaacacggtgtacagcgcgatagag
gaggcagacttccttgccatcgatggagaattttcagggataagcgacggtcctaatgtc
agtgcactaaccaacgggctagacacaccggaggagcgatacaagaagcttaaaaagcac
tccatggactttctgctgtttcagtttggtttgtgcacgttcaagtacgaccaggcgaag
tcaaagtatgtcataaaaccttttaatttttatatattcccgaaaccgttcaacaggacg
tctcctgacataaagttcatctgtcaaagttccagtattgacttcctggccagtcaggga
tttgacttcaacaaggtgttctgtaatggaatcccatacctaaatcaagaagaggaagcc
cagctgagggagcagacagaggagaggagaaatcaacatgctaacggtgtagggacacca
tcctacatctccccatcctcctccaaaggccctgcacatgttcctgaggaacataaagac
ttcatcaacagggtcatagagaaggttgaggccctctttactaactcagagaagactttg
gagttggagccgtgtactgggtttcagagaaagctgatataccagacactgaactggaag
tttcccaaggggcttcatgtggaaaccattgaaacagaaaaaaaggagcgctacatccag
gtcagcaaagtagatgatgaggagaggaagaggagagaacagcagaaactggagaaagag
caggaggagctaaatgatgctgttggcttctccagggtcatccacgccatctctaaatcg
ggtaaacttgtggttggacacaacatgctgctggatgtgatgcacaccatccaccagttc
tactgccctctgccagaggatcttcaagactttaaagaggtcacaatgtgtgtctttcca
agacttctggacacaaagttgatggcttccactcagccttttaaggagctgatcacgaac
acctctctggcagagttggagaaacagctgaaggagacccccttcaagtcaccacaagtt
gaaacggcagagggattccatagttatgacaccgcccaggagcagctccacgaggctggg
tatgacgcctacatcactggcctctgtttcatctcaatggccaactacctgggttctttc
ttgactccacccaaagcgtacatctctgctcgctccaaactaattgagccgttcttcaac
aagcttttcctgatgaggataatagatattccctacctcaacatcacaggaccagatttg
caacctaaaagagaccatgtcctgtatgtcacctttccaaaagaatggaagactagtgac
ctctaccagctctttagtgcctttggaaacatccaggtttcatggatagatgacacatca
gcgtttgtgtccctaagtcagacagaccaggtacagatagctatgaacaccagtcgatat
gcagagagttacaggatccagacttatgcagagtacatccagggtaagcagcaggacaag
gagaagctcggtcagacaaccaaatcttggggagaggacggctgggctaaatctcactac
acctctactacttcctgtggatatggatatcccaggggtttgcggaaacgcagcatcagt
cctgttcagggagagcacgaagctggagaggctctaattgcagacggctggagtcactac
tcgtatccggatagcacaggcagcaagaagatgaaaactgatgacataagtggacaggca
aatgcagaagctgtcgagagcaagacatcagaaggatggctaaagacggcagattcctca
gattcagcagggttaagtctggtccctgacgaggaggaaggtcctgagcccacagatcca
gccaatgatgctgaggggacagtcacctggcaacaagcctcaacggtccacaggaggaaa
ggtcaaaagaaaaagaaaactgaaggtgctgaatctacaacatcactgtttgaggtccca
gaagtctggtag
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