Micropterus salmoides (largemouth bass): 119898698
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Entry
119898698 CDS
T07309
Symbol
palb2
Name
(RefSeq) LOW QUALITY PROTEIN: partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03440
Homologous recombination
msam03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119898698 (palb2)
03460 Fanconi anemia pathway
119898698 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msam03400
]
119898698 (palb2)
DNA repair and recombination proteins [BR:
msam03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
119898698 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
119898698 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
119898698
NCBI-ProteinID:
XP_038568823
LinkDB
All DBs
Position
Unknown
AA seq
1438 aa
AA seq
DB search
MEDDAGDVLRCDEQLRTTLHYDDKEKLRRHLALLKREYIRTAQRLQRAERSEAGRSRSRN
AQQNHWDRRGSERTSNPCLNPSSLTLDTNNGTASGPAESNKSRRSQVIPLLLPSDAACCL
QNPDASHDTARGHRPSPALRLRSRRSRLRWEQRSTEAGRSTDNSEEGQEQSEMMDIARTE
GSEEGVTTEVVNESEELFSSTESESPSLLLTHWNACGQTQTGDMEGKEIQQKQREKETEL
GAEGKKDSESTPFLLTGWNPAIHIEEQDGTQIGRRKETEEGENSRRQRDGRLCEDSHEKN
LTYNVDHIKEEKNEMVGGEHDVKAVGLLDSCTLVEGLLFPAEYYVRTTRRMTLSQSQPDM
QAVILSQLSTGRHRRGWGRGRGRGLKRHTHNHEGSHQHSQTDSSSLTSTSVGPHMESQAA
DTSAELNSQSSSEISNKISACQINMDACFSPTVTAARPVRGRRRKRGRGRGRPQTPRCSV
SLDTCQVGFAETSDDPQPTSSLVSSSPSLHGADGPKPCLSQGEVVPVPDNPQPASTHITA
TQSSSGVNGAQSSSTSAHLEVYPIFVKSSGRTNRSSQMSRSAASWRSLLLPSSPPAQTPL
LPLPPLSSGPLVNNLMNFDILQDFHLPDDQFASLKLHKLRQVAVESGVEHFTSPSYNTRS
SNRRSDTRFSGSSNEPVMPLPVPLSLTPTITHSPHPTRVKQAATMSVDFENLSIDCKLTD
KLTSQSLPEESTDWENPGEQQTENLHPECQTHTTSTESVSLVQDCAADCVDQYKQKKTVI
LNSPSQSSASACNTHRSIERFAKPQPLVNFADTPAGVKDYVIGPSDRLTESIVMSSEKQT
DCPGVVHAFEDQRSTNLQTEDQAIIKTLSFDCSLEKTPEEPSNNCTAVRTLNDIEAPGES
PGQHLNVKSPAKDIEKSSEPSTSPLTENRHQDECLPHHSVQSQLLLSHPLASAHSPCVRP
HLRSSALPSSPALPSLGLTPYAVHAALPLTSSPSAPALTLPPPHTPSTQVLSPPALSLCP
SLTSIPASQSPTSPAGQIQNSPEPATCMTVFSIQSQGSGGQVGLRTEETAEEHMMRCTHT
RXRXTDDPAGGFLVDACCLHGSSGGLCVAAAGKWAVCLWSQTSVSDWSLAHTWAFSEPVI
NVFPVPDAAGLICVTLGQLEIREVRILSCSSLLQVLLREGLIQAVVGVSKSRVVTSCHSA
SGSTLQVFTLSDNGSTPSPQPLVSPGVCVGALATVDGLSDALIGTDEAGRLFIWNLKTGQ
LLRRILLGDGLSHTACLRGYSYCGVLFVLLQHQLLNSLEEEERKATAKDQMFLEEEKEEE
RTALFSLVAVNPLSGKSVQATLLYPPKAWSGRLCEADVNSSSVVGLSQSGCVCVWELGRQ
RAARMVWAPESDGWQLARWGAGHTLVTGHHNGDVTLHCYSTSQTSLCHIKDFSVAFIN
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgatgcgggagatgtcctgcgctgtgacgagcagctgaggactacactgcac
tatgatgacaaggagaagcttcgtaggcacttggcacttttaaaaagggagtacatcagg
acagcccagagactacagcgtgctgagcgttcagaggcagggaggagcaggagcagaaat
gcacagcagaaccactgggaccgaagaggttcagagaggacatctaacccctgtcttaac
ccatcttcactgacactggacactaacaatgggacagcctcaggtccagcagagtctaat
aaatccaggaggagccaggtgatcccgttactgctcccatctgatgctgcttgctgctta
caaaacccagatgccagccatgacacagctagaggtcacagacccagtcccgccctgcgc
ctcagatcccgacgcagccgcctgcggtgggaacagaggagtactgaggctggtaggagc
acagacaacagtgaggaaggacaggagcagagtgaaatgatggacattgctagaacagaa
ggaagtgaggagggagtcacaacagaggttgtgaatgaaagtgaagagctattttctagt
acagaatctgagtctccctctctgctgcttacacactggaacgcttgtggacaaactcaa
acaggagatatggagggaaaagagatacaacaaaaacaaagggaaaaggagacagagtta
ggagctgaagggaaaaaagactcggagtcaaccccttttctgctcacaggttggaaccct
gctatacacattgaagaacaagatggtacacagattggaagaagaaaggagaccgaggaa
ggagagaatagtagacgacagagggatggaagactgtgtgaagacagtcatgaaaaaaat
cttacatataatgtagatcacataaaagaagaaaaaaatgagatggttggaggagagcat
gatgtaaaggctgtgggtctcctggattcctgtaccctagtggaaggactacttttccca
gcagagtactatgtcagaaccacaagacgtatgacattgtcacagagccagcctgacatg
caggccgtcatactctcccagctgagcactggacgacatcgcagaggctggggccgcggc
cgaggcagaggattaaaaaggcacacacacaaccatgaaggttcacatcaacactctcag
acagatagctcctcgcttacatctacatctgtaggtcctcatatggaatcgcaggctgct
gacacatcagctgagctgaacagtcagagctccagtgagatttcaaataaaatctcagca
tgtcagatcaacatggatgcttgtttttctccaacggtcactgctgctcgtccagtaaga
ggtaggaggaggaaaagaggtaggggtagagggagacctcagaccccacgatgctctgtt
agtttagacacctgtcaagtaggctttgctgaaacctcagacgatccccagcccaccagc
tctctggtctcttcgtccccgtctctccatggagctgatggaccaaagccctgcctcagt
caaggagaagttgtgccagtgccagacaacccccagcctgcatccacccacatcacagct
acgcagtcttcttctggagttaatggagctcagtctagctctacctctgcacatctggag
gtctatcccatctttgtgaagagcagcggcaggactaacagatcctcacagatgagtaga
agtgcagcaagctggcgatctctccttttgccctcctctccacctgcccaaacccctctg
cttcctctcccccctctgtcctctggcccgttggtcaacaacctgatgaactttgacatt
ctgcaagatttccatctccccgatgaccagtttgcctctctaaagctgcacaagctccgc
caagtcgctgtggaatcaggagttgaacattttacatccccgtcttacaacacacgtagt
agcaacaggcgttctgacactcgcttcagtggcagcagcaatgagccagtgatgcctctt
cctgtcccactcagcctcacgcccacaatcacacattcaccccatcccactagagtaaaa
caagctgctacaatgtccgtagactttgaaaacttgtcgatagattgcaagcttacagat
aaattgacaagccagtccttacctgaagagtcaactgactgggaaaaccctggagagcag
cagactgaaaaccttcaccccgagtgtcagactcacaccacctcaacagaatctgtgtcg
ctggtccaggattgtgctgcagactgtgttgatcaatataaacagaaaaagactgtgatt
ctgaattctcctagccagagtagcgcctcagcctgcaacacacacagatctatcgaacga
tttgccaaaccacagcctctcgtcaactttgcagacacccctgcaggtgtgaaagattat
gtcatcgggccctctgatagactaacagagtctattgtcatgtcatcagagaaacaaaca
gattgtcctggtgtagtccatgcttttgaggatcagaggtctacaaacctccaaacagaa
gaccaagctatcattaaaactctttcctttgactgttccctagagaaaacccctgaggag
ccgtctaacaactgcactgctgtgcggacattaaatgacattgaagctccaggagagtct
cctgggcagcatctgaatgtgaaatcccctgccaaagatatagagaaatcctctgaaccc
agcacaagtcccctcacagaaaacagacatcaggacgagtgtttaccgcaccacagtgtc
cagtcccagctcctgttgagccatcctctggcatcagcacacagcccctgtgttagacca
cacctgcgctcctctgcccttccctccagccccgcactaccatcactaggactcaccccc
tacgctgtccatgctgccctccctctgacctcctctccctctgccccagctctcaccctg
cctccccctcataccccatccacccaggtcctctcccctccagctctttctctctgccca
tccctcacttccatccctgctagccagtcccccacctccccagctggtcagatccagaat
tcacctgagcctgctacctgcatgactgtcttcagcatccagtcacagggctcaggtggg
caggtgggcctgagaacagaggaaacagcggaggaacacatgatgagatgcacacacaca
cgttaaaggtaaactgatgacccagcaggaggctttctagtggatgcctgctgtctgcac
ggatcatctggtgggttgtgtgtagcagcagctggaaagtgggcagtgtgtctctggagt
cagacttcagtgtctgattggagcttagcacacacctgggccttcagcgagccagtgatc
aatgtgtttcctgtcccggatgctgctggactcatatgtgtgactctgggtcagttagaa
atcagagaagtgaggattctgtcgtgctccagccttttgcaagtgctgctccgcgagggg
cttatccaggctgttgtgggcgtgtccaagtccagagtggttacctcctgccactcggct
tctggttccaccctgcaggtgtttacactatcagacaatggcagcacaccgagccctcag
cctcttgtgtctcctggtgtttgtgtcggggcactcgctactgtggacggactctcagat
gctctgatcggcacagatgaggctggacgcctctttatctggaatttaaagactggacag
ctgctgcggagaatcctccttggagatggtttatcacacacggcctgcctcagaggatac
tcctactgtggagtgttatttgtcctgctgcagcaccagttgctcaactcactggaggaa
gaggaaagaaaggccacagcaaaagatcaaatgtttctggaggaggagaaggaagaggaa
aggaccgccctgttctccttggttgctgttaaccctctgagtggaaaatctgtccaggct
acccttctgtatccgcccaaggcctggtctggcaggctgtgtgaagccgacgtgaacagc
tccagcgtggtgggcctgagtcagagcggctgtgtgtgtgtgtgggagctcgggcgccag
cgagccgcgaggatggtgtgggctcctgagagcgatggctggcagctggctcgatggggg
gcgggacatacgctggtgactggacatcacaacggagacgttaccttacactgctacagt
acgagccagacttcactctgccacattaaagacttttcagtcgcttttatcaattaa
DBGET
integrated database retrieval system
