Micropterus salmoides (largemouth bass): 119898979
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Entry
119898979 CDS
T07309
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119898979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msam03041
]
119898979
03009 Ribosome biogenesis [BR:
msam03009
]
119898979
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119898979
Spliceosome [BR:
msam03041
]
Complex A
U2 snRNP components
U2 related factors
119898979
Complex B
119898979
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
119898979
Ribosome biogenesis [BR:
msam03009
]
Eukaryotic type
90S particles
Helicases
119898979
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
Atrophin-1
nSTAND3
AAA_29
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
119898979
NCBI-ProteinID:
XP_038569261
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MSKRHRLDLGDDYSTSKKRSEGRDRDRDRDREDRSKDRERDRDRDRDRDRDPKPSSVPSN
STAPEPILQPLKQMAMHQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFSDIITRHQS
FVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQ
EVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGV
LKEVVRQRADLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAA
IRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQ
QQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVES
LLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLK
KLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMV
IASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFK
QNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALCT
GFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKP
EWLVKIAPQYYEMSNFPQCEAKRQLERIISKLESKEYSQY
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagacaccgtctggatttgggtgatgactactccaccagtaagaagaggtct
gaagggagagacagggatcgtgatagagaccgcgaggaccgctccaaggacagggaacga
gatagggacagggacagagaccgggacagagacccgaagccttcaagtgtcccgtctaac
agcacagcaccggagccaatcttgcagcctctcaagcaaatggccatgcaccagcagatc
aacccattcacaaacctgccgcacacgccgcgctactacgagatcttgaagaagaggtta
cagcttccagtgtgggagtataaggagaggttcagcgacatcatcacacgtcatcagagc
tttgtccttgttggagagactggctccgggaaaacaacacagatcccgcagtggtgtgtg
gacatggtgaggggcttacctggacctaagcgtgcggtcgcctgcactcagcccaggaga
gtggcggctatgagtgtggctcaaagggtggcagatgaaatggacgtcatgcttggacag
gaagtgggctactccatccgatttgaggactgtagttctgccaagactatactcaagtac
atgacagatggtatgttactaagagaggcgatgaatgacccgctactggagcgatacggt
gtgatcattctggacgaggcccacgagcgaactctggccacagatatcttgatgggagta
ctcaaggaggtggtgcgtcaaagagcggatctgaaggtgatcgtcatgagtgccacgcta
gatgctgggaagttccaggtgtacttcgacaactgtcctctcctgactattcccgggcgt
acacaccctgtagagattttctacactcctgaaccagagcgagactaccttgaggcagcc
atccgcaccgtcatccaaattcatatgtgcgaggaagatgaaggtgactgccttctcttt
ctcactggtcaagaggaaattgatgaggcctgcaagcggatcaagcgtgaggtagatgac
cttggacctgaagtcggagacatcaaaatcattccactgtattccacattgccaccacag
cagcagcaaaggatctttgagccgcctcctccaagaaagcccaatggtgcaataggaaga
aaggttgttgtttcgacaaacattgctgagacttctctaacaattgatggtgtggtgttt
gtcattgatcctggctttgccaaacaaaaggtttacaatccccgtatcagagttgagtct
cttctggtcacagccataagtaaagcttctgcccagcagagggcaggacgagccgggaga
acacgtccagggaaatgtttccgcctctacacagagaaggcctacaaaacagaaatgcag
gataacacataccctgagattcttcgatccaacttgggatctgttgtgctgcagctgaaa
aagctaggtattgatgaccttgtgcactttgacttcatggatccaccagctcctgagaca
ctgatgagggccctcgagctgctgaattacctggcagctctcaacgatgacggtgacctg
acagagctgggctccatgatggcagagtttcctctggacccccagctggctaagatggtc
attgccagctgcgagtttaactgctctaacgagatcctttccattactgctatgctgtca
gtcccacagtgttttgtccgccccacggaggctaagaaggcagcagacgagtccaagatg
aggtttgctcacatcgacggagaccacttgactctgcttaacgtctaccacgccttcaaa
caaaaccacgagtctaaccagtggtgctatgacaactttgtcaactaccgttcactgatg
tctgcggacaacgtgcggcagcagctgtccaggatcatggaccgcttcaacctgccccgc
cggagcactgagttcaccagcagagattactacatcaacatccgccgagctctctgcacc
ggcttcttcatgcaggtggctcatttggagcgcacaggtcattacctcacagtcaaagac
aaccaagtggtccaactccacccatctacagttctggaccacaagcctgagtgggtgctc
tacaatgaatttgtcctcaccaccaaaaactacatccgcacttgcacagacatcaaacca
gagtggctggtgaagattgcaccccagtactatgaaatgagtaacttcccacaatgtgaa
gctaaaagacagttggagcgaataatttccaaactagagagcaaggagtactctcagtac
tga
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