Micropterus salmoides (largemouth bass): 119899586 Help Entry 119899586         CDS       T07309                                  Symbol pdcd11 Name (RefSeq) protein RRP5 homolog isoform X1   KO K14792   rRNA biogenesis protein RRP5 Organism msam  Micropterus salmoides (largemouth bass) Brite KEGG Orthology (KO) [BR:msam00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:msam03009]     119899586 (pdcd11) Ribosome biogenesis [BR:msam03009]  Eukaryotic type   90S particles    Other 90S particles     119899586 (pdcd11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  S1_RRP5 S1 Spt6_S1 HAT_PRP39_N HAT_PRP39_C HAT_Syf1_CNRKL1_N Suf TPR_14 OB_RRP5_4th TPR_19 HAT_Syf1_CNRKL1_C UTP6_C TPR_16 TPR_CcmH_CycH ARM_TT21_5th ARM_TT21 DUF2110 TPR_15 Wzy_C_2 PPR NRDE-2 Motif Other DBs NCBI-GeneID:  119899586 NCBI-ProteinID:  XP_038570132 LinkDB All DBs Position Unknown AA seq 1808 aa AA seqDB search MASVEEDFPRGGASKKATESKIMVQRTEVDNLFQSNEQAETKKRKGAVRDDGKKLKKPKT VKDKSLTLNAAAKCVEILHIKNIKEGMLMLGCVKEVTDFEVTVGLPCGLQGFLSIKNICD SYTKLLTELLDSADTEEICSLPHLFYTGMVFRCVVAKLDVAKGGSLSIQLSINPKLVNKG LTSSSLKAGMVLSGCVESVEDHGYIVDIGINGTKAFLPKKAAKDAEELKVGQYVSSQMEE VKNDGRVVRLSVSPSTVAQACAESKQGWNLTNLLPGLLVKATIKKVTKHGLILDFLSSFS GQVDFLHMEPEEASSYIEGAEVRACVLYVEPSTRLVALSLRSYLVQPGTRVDPSPAGGDR IGEVVTDCKMTTMHHMSGAMLELPDKTLAFVHRNHLKESNEPANENRVLAMSEHTCRILD FSPMDQIHFVSLRKSVIERPFFRYQDLQAGQYVEGTVSVLLNHGMVVHLSDHIKGLVPRT HLSDILLKNPEKKYMEGMKIKCRVLSVDAENKKLYLTRKKALVESSLPLFLSYSDARPGR VSHGYIVCIKDFGCIVRFYNNVKGLVPVNELSSEPIISPEDIFYVGQVLKTKVLQCDPDK AKMVLSFKAAVEGDTEEAAKPHFDCEVGKRLQARVLKKSVNGLEVAILPDEIRAVLPTVH LSDHMSNCPLLWESLQEGDNISNLICFSKNKQNIILTKKPTVRWSMEEGVVAKDFSEITV GMQLIGWIKNIMSYGVFVEFPYGLVGLAPKSAMTDKFVSDATTAFQLGQTVYAKVTNLDE EKRRFLVTLKISEVICPEGDAQTRLINGLQERRALTEMLAMRENSDLRQQLAALSVGQKL KLTVDTAKDSSATFKSDDLVSATILATKHHVMGVNLTPGQKVTAVVLHVDILSTRVHVSI LSKLVGKKKSLTEGSKYTATVQHTDKDFAVISLADTAQLTVIQTSSHLNEIFLSESEMVK AGMSLAVEVIEPSCQEVQGLPLVSWARSGPKRQRTTSENQTSSKGHRFGEIVQGKVRTVK PTSIQVTLEDGSTGSVHVSEVVEVSEACQRSFPTSSVKVGSVVTARVIGGREASSHRFLP FSHPKFTYTIPELTLIPSKLDASADLKPVTAKEKLNSYKVGEEITCFVSKFNPERKSLEV STDPCVTGTVELLAIITDPKDASHPEKLYKLGQAVHAKVVEVNSKPQRLVLSLTGVHKLE TGSVTLGMVTNIQPQVGLLVKLPFGGMGTVCVTDLADAYRPNPLDGYSKDQLLRCFLLGS ENGRWALSLRPTRLNPQQAKPAKDPEVLSVDKLKAGQIIRGYVKSVGEQGVFIRLSKSIT GRAQLQQSTKYFVSNHKVLSEHLPPNTLLTTKILSIDKKEVLVNLSLLPVDTGKPDVLPE SLGLPLRLIGEDKKKHDTKKKKRTLSESEEKQAESQVPKKKKKKTKKAKTDGNDSGVEVF FREEEDEEEPKSDSVKQVSRNSVGPSRLQVAAGFSWDVGLSSLKPASAAPEGDFSDGEDQ DGSSKPQKKSRHELEQEKKAAEKALVQREAELMDPTLQPQDAAAFERLLLATPNSSLLWL QYMAHHLQATQIEQARTVAERALKTISFREEQEKLNVWVALLNLENMYGTEESLKKVFER ALQFCEPMPVYQQLADIYAKSDKTKEAEGLYKTMVKRFRQNKAVWLSYGTFLLQQGHSDA ASALLQRALKSLPSKESVDVIAKFAQLEFRYGDAEKGRTMFDKVLTSYPKRTDLWSVFID LMVKYGSQKEVRALFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQSIQAVKEKAIEFVE AKGTEAAN NT seq 5427 nt NT seq  +upstreamnt  +downstreamnt atggcatctgtggaggaggacttccctcgaggaggggcatcaaagaaggccactgagagt aaaataatggtgcagaggacagaagtggacaacttgttccagtcaaacgagcaagcagaa actaagaaaagaaagggggcagtcagagatgacggcaagaagctcaagaagccaaagacg gtcaaagacaaaagtctgacgttgaatgcagcagccaagtgtgtggaaattctacacatc aagaatattaaggagggtatgctgatgctgggctgtgtgaaggaggtaacagactttgag gtgacagtcggcctgccttgtggcctgcaaggcttcctcagcatcaaaaacatctgtgac tcgtacaccaagctgctcaccgagttgctggattcagctgatacagaggagatctgctct ctgccacacctcttctacactggcatggtgttcaggtgtgtggttgccaagttggatgta gccaaaggaggctctcttagcatacagctgtcaatcaatccaaagctggtcaacaaggga ctcacctcaagttctctgaaagctggcatggtcttgagtggatgtgtggagagtgtggag gatcatggctacatagttgacattggcatcaatggaaccaaagctttcctgcctaagaaa gcagcaaaagacgcggaagagctgaaagtgggtcagtatgtgagttctcaaatggaagaa gtaaagaatgatggccgtgtagtccgcctttctgtcagcccctcgactgtcgcccaggcc tgtgctgaatccaagcagggctggaacctcactaaccttctgcctggtcttctggtcaaa gccacgatcaaaaaggtgaccaaacatggtctgatcctggacttcctgtcctcctttagc ggccaggtggactttctccacatggagccagaagaggcatccagctacatcgagggagct gaggtgcgagcctgtgtgctgtatgtggagccatccacccgtctggtggccctgagcctg cgcagctacctcgtccagcccgggaccagagttgacccctctcctgctggtggtgaccgc attggtgaagtggtgacggactgcaagatgaccactatgcaccacatgtcaggagccatg ttggaactgccagacaaaacgttggcctttgtacataggaaccacctgaaggagtctaat gagccagctaatgaaaacagagtgctggccatgtctgaacacacctgcaggatcctggac ttcagccccatggaccagattcattttgttagtctgcgcaagagtgtgattgagaggcct ttttttagatatcaggatcttcaggctggtcagtatgttgaggggacagtgtcggtcctg ctgaatcatggcatggtggtgcatttgtctgaccacattaaaggcctggtgccccggacc cacctgtctgacatcctcctcaagaacccagagaagaagtacatggagggcatgaagatc aaatgtcgggtgctgtcagtagatgcagagaataagaagctgtacctgaccagaaagaag gccctggttgaaagctccctgccattgttcctcagctattctgatgcccgtcctggccgc gtgtcccatggttacatcgtctgcatcaaagactttggttgcatcgtccgtttctacaac aacgtcaagggtcttgtgcctgtcaatgagctcagctcagagcccatcatcagtcctgag gacatcttctatgtgggtcaggtgttaaagaccaaagttcttcagtgtgaccccgacaag gcgaagatggtgctttcatttaaagcggcggtggagggagacactgaggaagctgccaag ccccactttgactgtgaggtggggaagaggctacaggccagggtgctaaaaaagtcagtc aacggtctggaggtggccatcctccctgatgagatccgtgccgtactacccacagtgcac ctttctgatcacatgtccaactgccctctgctgtgggagagcctgcaggagggagacaac atctcgaacctcatctgcttcagcaagaacaaacagaatatcatcctcaccaagaaacca acagtgagatggtcaatggaggaaggagtggttgccaaggatttctctgaaatcacggtt ggaatgcagctgattggctggatcaagaacatcatgtcctatggcgtctttgtagagttc ccctacggccttgttggtcttgcacccaagtcggccatgaccgacaagttcgtcagtgat gcgacgactgccttccagctgggccagacggtgtatgctaaagtgaccaacctggatgag gaaaaacgtcgtttcctggtcacgctgaagatttcagaggtcatatgtccagagggtgat gcccagacgaggctcattaatggtctgcaggagagaagagctttgactgaaatgttagct atgagagaaaacagtgatcttcggcagcagctggctgctctgtctgttggtcagaagctg aagctgactgtagatactgcgaaggacagcagtgccacctttaagtcagatgatttggtc agtgctaccatactggccaccaagcaccatgtcatgggagttaacttgaccccaggacag aaagttactgcggtcgtcctccatgtcgacatcctctcaacacgtgtccacgtatccatc ctttccaagctggtggggaaaaagaaatctttaactgaaggatcaaagtacacagcgacg gtgcagcacaccgacaaagactttgctgtcatctcactggctgatacggcacagctgact gtgatccaaactagcagccacctgaatgagatttttctgtccgagtcagagatggtgaag gcggggatgagtttggccgttgaggtcatagaacccagctgtcaggaagtgcaggggctg cctctggtgtcgtgggcgcgcagtggaccaaaacgacagcgcaccacctctgaaaaccag acgtcctctaagggtcaccgctttggtgaaatcgtgcagggtaaagtgcggacagtgaag cctacctccattcaggtcacactagaagatggaagcacaggcagcgtgcacgtgtctgag gtggtggaggtttcagaagcatgtcagagatccttccccacatcctccgttaaagtgggc agtgtggtcaccgccagggtcatcgggggacgagaagcctctagtcacagattcctgccc ttctcccatcccaaattcacatacaccattcctgagctcacactgatacccagcaaactg gatgcgagtgcagatttaaaaccagttacagcaaaagaaaaactaaacagctacaaggtc ggggaagaaattacatgctttgtatcaaagtttaatccagagaggaagtctttggaggtc agcactgatccttgtgttactgggacagttgaactgctggccataatcactgatccaaaa gatgccagccacccagagaagctgtacaagctgggccaagctgtccatgccaaagtcgtg gaagtgaactccaaacctcaacgccttgtgctgtccctcacaggtgtccataaactggag acaggcagtgttactttggggatggtgactaatattcagccacaagttggccttctggtc aaacttccctttggcggcatggggactgtttgcgttactgacctggctgacgcctacagg ccaaaccctctggacggatacagcaaggatcagctgctccggtgtttccttctcgggagt gaaaacggcaggtgggcgctgtctctacgtccaacaagactgaatccgcagcaggccaag ccagcgaaggacccggaagttttgtctgtagacaaactgaaggcaggccagatcatcaga ggctacgtcaagtctgtgggagagcaaggggtcttcatcaggttatcaaagagtatcaca ggaagagcccaacttcagcagtctaccaagtactttgtcagcaaccacaaggtcctctct gagcacctgcctcccaacaccctgctcactaccaagatcctcagtattgacaaaaaggag gtgttggtcaacctctctctgctcccagtggacactgggaagccagacgtccttccagaa tctctcggtctgccgctgcgtctgatcggagaggacaagaagaaacatgatactaagaag aagaaacgcacgctgtctgagagcgaagagaaacaagcagagtcccaggtaccaaaaaag aagaagaagaaaacaaagaaagcaaagactgatggcaatgacagtggagtggaggtgttc ttcagagaagaggaggatgaagaagaacccaaatccgattctgtaaaacaggtgagtcgc aactcagtgggtccttccagactgcaggtggcagcaggtttctcctgggatgtgggactg agctccctgaagcctgcttctgctgcgccggagggggacttcagtgacggagaggaccaa gatggaagcagcaagccccagaagaagtctcgtcatgagcttgagcaagagaagaaggca gcagagaaggccctggtacagcgggaggccgagcttatggatccgaccctgcagccccag gatgcagctgcctttgagcgcctgctgcttgccacacccaacagctccctgctttggctc cagtacatggctcaccatctgcaggccacccagatcgagcaggcccgcactgtggcagag agggccctcaaaaccatttccttcagggaagagcaggagaagctgaatgtgtgggtggcc ctgctgaacctggagaacatgtacggcacagaggagagcctgaagaaagtgtttgagcgg gcgctacagttctgtgagcccatgcctgtgtaccagcagctggctgacatctacgcaaag tctgacaagaccaaggaggcggagggcctgtataagacgatggtgaagcgtttccgtcag aataaagcagtgtggctgagttacgggaccttcctgctccagcagggtcacagtgatgct gccagtgctctcctgcagagggcgctgaagagtctgccctccaaagaaagtgtggatgtc atcgctaagtttgcgcagctggagttccgttatggtgatgctgagaaaggtcgcactatg tttgacaaagtcctgacgagctacccgaaacgtacagacctctggtccgtcttcatcgac cttatggtcaaatatggatcacagaaggaagtcagggcgctctttgatcgtgtgatccac ctgagtgtttcagtgaaaaagatcaagttcttcttcaagcgctacttagagtatgagaag aagcatggcacgccgcagagcatccaggcagtcaaagagaaggccattgagtttgtggaa gctaaaggcacagaggctgccaactaa

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