KEGG   Micropterus salmoides (largemouth bass): 119899749
Entry
119899749         CDS       T07309                                 
Name
(RefSeq) THO complex subunit 4-like
  KO
K12881  THO complex subunit 4
Organism
msam  Micropterus salmoides (largemouth bass)
Pathway
msam03013  Nucleocytoplasmic transport
msam03015  mRNA surveillance pathway
msam03040  Spliceosome
msam05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:msam00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119899749
  09122 Translation
   03013 Nucleocytoplasmic transport
    119899749
   03015 mRNA surveillance pathway
    119899749
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    119899749
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msam03019]
    119899749
   03041 Spliceosome [BR:msam03041]
    119899749
Messenger RNA biogenesis [BR:msam03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     119899749
    TREX complex
     119899749
Spliceosome [BR:msam03041]
 Complex C
  Other components
   EJC/TREX
    119899749
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    119899749
SSDB
Motif
Pfam: RRM_1 FoP_duplication FYTT Btz RRM_5 RRM_occluded
Other DBs
NCBI-GeneID: 119899749
NCBI-ProteinID: XP_038570372
LinkDB
Position
Unknown
AA seq 257 aa
MADKMNMSLDDIIKLNKKGGSGRGGGSSRSGGSSGRAGGSSRPPRSRQNNFNRERNNRTT
PYTRPRELPDKWQHDMFEEHAGGHRGQSAGAERSVESSGKLLVSNLDFGVSDSDVRELFV
EFGTLQKASVHYDRSGRSKGTADVHFENKADALKAMKHYNGVPLDGRPMKIQQVTSEVDT
QSRQSMQSSNRGFDRSRLGQPTFERSDRSDRRQGGGSGGFRGGRGRGRGRGSGNRPQLSA
EELDAQLDAYNAKMDTS
NT seq 774 nt   +upstreamnt  +downstreamnt
atggcggataagatgaacatgtctctggacgacattatcaagctgaacaagaaaggaggc
agcggccgcggaggaggatcgtcccggtcgggtggaagttcaggtcgggccggtggatcg
tcgaggccgccgcggagtcgacagaataacttcaaccgtgagagaaacaacagaaccaca
ccgtacacccggcccagagagttaccagacaaatggcagcatgacatgtttgaggagcac
gctggtggacacagaggacaaagtgcaggagcagaacgaagtgtagaaagtagtggcaag
ctgctggtttccaatctggacttcggcgtctccgactcggatgtcagggagttgtttgta
gagtttgggacattacagaaggcatctgtacactacgaccggtctggtcgcagtaaagga
actgcggatgttcactttgaaaataaagcggatgcacttaaagcaatgaagcactataac
ggtgtcccacttgatggccgacccatgaaaatccagcaagtgacttcagaggttgacaca
cagagtagacaatctatgcaaagttcaaacagaggctttgaccggagcagacttggacag
cccacgtttgaaaggagtgacaggagtgacaggaggcaaggtggcggcagtggaggtttc
agaggtggaaggggaaggggaagaggaagaggaagtggaaacagaccccaactttctgcc
gaggagctggatgcccagttggatgcttacaatgctaagatggacaccagctaa

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