Micropterus salmoides (largemouth bass): 119899808
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Entry
119899808 CDS
T07309
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119899808 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119899808 (patl1)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119899808 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
119899808 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
119899808
NCBI-ProteinID:
XP_038570503
LinkDB
All DBs
Position
Unknown
AA seq
838 aa
AA seq
DB search
MRRSRSVRLAACEAARSPGDMRRRSLDEDCTLEEEDEGLIEEEDEIDQFNDDTFGAGAID
DDWQEEHKRLAELDEKDGLGAGLGMGGESDGTEDSLSSRLPLPSSLPSLKFSSSSAGQPL
PDVEERGGEGDLAESLARLILDADPAIAGVGAAERPGPSPSSSGSGLSTLQGPDPPRVRA
QPSSIPLPTQPYQHPHHPQNQPPPGPSTSGLPPGPPSSSMLSYQQQQHMMRRGNAPIGQM
NSHSIWDNSMGFGPVSVTPGLVTHMEDSPLMSIIKEVGLPKRLPQGRNDEGRDLSERVPP
PRSSSPVIGSPPVRAVPIGTPPKQPMSHPLNHQIHHPTAVHVRAPVQHRYPPPFPERLSP
NTLLNIANSPLCRGPFPPGVGPVLSQIQRAQLLNSQVAGFPHGGPPLLPGGGFRPFFGGP
PPPHGHRMGPPPPHGPPNHTPPIRHNTTHLHPQHRRMLTQRMQNRGGDRGRTGGDRRSRD
PYSNLMTQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERESDSSKKEHTTKL
ITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQ
ILYTVEKMYSLLLEVQDFEKRFVQATEEDRGALLEQHKTNTVQLCNSLRENEWDDRVSDE
QCVMIMSVRKGKRLVSRLLPLLPSPQAAAVVMAIARNLPALAKKDKQDQVLCWLVEPVSA
VIQSLSSAALTDLLQELQGSEGQLATVLHNKFGVTLLYLILSEGERMQSSDPNCQLMDDN
RWTELVFSATRELLSVPSSSLAPPLFTPPNLLSLLSRYVDRQRLELLQDKLQISALSR
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgcgacggtcgcgttcagtgcggttggcggcctgtgaagcagcccgctcgcctggtgac
atgcgccgcaggtccctggatgaagactgtacgttggaggaggaagacgagggactgata
gaagaggaggatgaaatcgatcagttcaacgacgacaccttcggagctggggccatcgat
gatgactggcaggaggaacacaaacgcctcgccgagctcgatgagaaggatgggctagga
gcggggcttgggatgggaggagaatcagatggaacggaggactcgctctcctcccgtctc
ccccttccatcttccctcccttcgctcaaattctcatcgtcttccgctggacagcctctc
ccagatgtggaggagcgaggaggggaaggtgacttggctgagtccctggccagactcatc
ctggacgccgacccggccatcgctggggtcggggcggctgagaggcccggtccatcgccc
agctcttcaggatccggcctgtccactctgcaagggccggacccacccagagtccgggcc
cagccctcctccatcccacttcccactcaaccataccagcatccccatcacccccagaac
cagccgcctcctgggccctccacctcaggccttcctcctggccctccttcctcgtccatg
ctcagctaccagcagcagcagcacatgatgcgcagaggcaatgctcctataggccagatg
aactctcacagtatctgggacaacagtatgggctttgggccggtcagtgtaaccccagga
ctggtgacgcacatggaggatagtcctctaatgtctataatcaaggaggtgggccttcct
aaacgacttcctcagggtaggaatgacgaaggacgggacttatcggagagggtcccacct
ccacgctcttcttctcctgtgattggctcccctccggtcagggcggtgcctattgggacc
ccgcccaaacaaccaatgagccaccccctgaatcatcagatccaccatcctacagcagtt
catgtgcgagccccggtccagcacagataccctcctcctttccctgagcgtctgtcaccc
aacaccctcctcaatatagctaactctccgctgtgtcgcggcccgtttcctcccggagtt
ggtccggtcctgtctcagatccaacgtgcccagctgctcaactctcaggtggctggtttt
cctcacggtgggcctcctttgttaccaggtggtggcttcaggccgttcttcggggggcct
cctcctccacacggtcaccgaatgggtccaccgccccctcacggcccccccaaccacaca
ccacccattcggcacaacaccacccacctccaccctcagcatcgccgcatgctcacgcag
cgcatgcagaaccgaggaggggaccgtggcaggactggaggggaccggcgcagcagggac
ccatacagtaacctgatgactcagaaagagaaggaatgggtaaccaagatccagatgatg
cagctgcaaagtactgacccgtacctggatgactactactatcagaactactatgaaaag
atggagaaacgtcaggaaagagagagcgacagcagcaagaaggaacacaccaccaaactt
atcacgccacaggtcgccaaggtcgaacacacctacagaccagttcagttcgcgggctct
ctgggtaagctgacagtctccagcgtcaacaaccctcgcaagatgattgatgctgtggtg
accactcgcacagatgatgaggagaaaagagagaagcaagtctggaataagaggcgacag
atcctctacactgtggagaagatgtacagtttgctgctggaggttcaagactttgagaaa
cgttttgtccaggcgacggaggaggacagaggggctctgctggagcagcacaaaaccaac
accgtgcagctgtgcaactctctgcgggagaacgagtgggacgacagagtgagcgatgag
cagtgtgtgatgatcatgtcggtgcggaagggcaagcggctcgtctccaggctcctcccc
ctcctgccctcaccccaggccgccgccgttgtcatggcgattgcccgcaaccttcccgcc
ctagccaagaaggacaagcaggaccaggtgctgtgctggttagtggagccggtttctgca
gtgatccagtcattgtccagcgccgccctcacagacttgctccaggagcttcagggcagc
gagggccaactggccacagtactgcacaacaagtttggtgtgacactgctgtatctgatc
ctgagtgaaggagagaggatgcaaagctcagaccccaactgtcaactcatggacgacaat
cgatggactgagttggtgttttcagcgacgagagagttgctcagcgttccctcctcctcc
ctcgcccctcccctcttcacccctcccaacctgctctccctcctgtcacgctacgtcgat
cggcagaggctggagctgttgcaggacaagctacagatctctgctttgtccaggtag
DBGET
integrated database retrieval system
