Micropterus salmoides (largemouth bass): 119901064
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Entry
119901064 CDS
T07309
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04010
MAPK signaling pathway
msam04020
Calcium signaling pathway
msam04144
Endocytosis
msam04510
Focal adhesion
msam04540
Gap junction
msam04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119901064 (pdgfra)
04020 Calcium signaling pathway
119901064 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119901064 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
119901064 (pdgfra)
04540 Gap junction
119901064 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
119901064 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
msam01001
]
119901064 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
msam04090
]
119901064 (pdgfra)
Enzymes [BR:
msam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
119901064 (pdgfra)
Protein kinases [BR:
msam01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
119901064 (pdgfra)
CD molecules [BR:
msam04090
]
Proteins
119901064 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
Ig_ADGRF3
Motif
Other DBs
NCBI-GeneID:
119901064
NCBI-ProteinID:
XP_038572430
LinkDB
All DBs
Position
Unknown
AA seq
1477 aa
AA seq
DB search
MGGVKTYVVFGGILVVLSVTSGLPLPTIVSNEQEFILQPNSVFNISCTGKRNVVWAEPLP
NNAFVYPGYYTATLFIYNATVENTGYYMCTYETQEGPLADEPGEDSEAGIYVFVPDPLAP
FVPETPDNLVVPMDTPGVPISCRVSDPYFHVVLRSVSSGEEMSVYYDNKMGFFGSLLPGQ
YQCETIVNGQTFRSVIYTVKAEDHEEKEDFDVEVKVSEETVRAGKPFNVTCVAPTGLGFQ
QQWLHLKKQAVDAVQMKQTFPDRVIYTLSIPQATSQDSGTYECSITHKISGKVRVSIAAV
TVFEEDSFVALDHSGILATEFVSLLEETEFTILINAYPAPKVMWLKDGKAIPQNYYVLTK
TSHLEGNRYQSILILRQPLVKDNGNYTITALSGSHTAQFSFSLKVKAPTAVMFPASSAPV
LLPQVEEMVVPLYTPFTLTCRGEAKLAWETPLDVAEKTQEDNSGLFVTTITVDNPTAMHT
GYYTCLYSNTTEDTERSSIYIYVPDPDVPFVPSPAPFGNHVLSDHEEMEIQCRVSDPRTN
VTLVNVDTDHPVPSFYDSKRGALGVFTAGTYVCKTVINGEEHYSEEYIVHGWTGGTAGFT
ELHVELTAKRTALLVGDTLTVTCLARGSLILDDHWKYPGKVTNRAVKTVHENKRDQEILY
TLTIQQASTKDSGIYSCSITDIISNESQTKELIIQVFASQFMSISPEFEGYESAELDEVR
EFRAQITSFPSAHVSWLKDGIPLSDVTAEISTSLRQLNETSYMSVLTLIRAKEEDSGNYT
IRVKNGDQSQDVGWILEVKVPAVIVDLMDIHHGSATGQSVVCITRGQPTPVVEWFICKNI
KRCANDSSSWVPLPPNSTEITMDSHFDEDNNLESQVLFGHLENTLSVRCLARNEMATVSR
EVKLVSSGPHPELTVAAAVLVLLVIVIISLIVLVVIWKQKPRYEIRWRVIESVSPDGHEY
IYVDPMQLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPT
ARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRET
FLSLNTEKTKKELDIFGINPADESSRSYVILSFESKGDYMDMKQADNTQYVPMLEMSKTS
KYSDIQGSNDEYPPSYDHPLSQKGSSETDDLLSEDMNEGLTTTDLLSFTYQVAKGMEFLA
SKNCVHRDLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDN
LYTTLSDVWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMSKPEHAPHDVYEMMM
KCWNSEPEKRPSFLGLSDTVASLLPSSYKRHYERVNHEFLKSDHPAVTRVCVENDDAYIG
ITYKNQGKLKDRESGFDEQRLSSDSGYIIPLPDLDPISDDEYGKRNRHGSQTSEESAIET
GSSSSTFAAREGETLEDITLLDEMCLDCSDLVEDSFL
NT seq
4434 nt
NT seq
+upstream
nt +downstream
nt
atgggtggggtaaagacgtatgtcgtctttgggggtatcttggtggtgctttcagttaca
tctgggctgccgttacctaccattgtgtccaacgaacaagagttcatcctgcagcccaat
tccgtgttcaacataagctgtaccggtaaaagaaacgtcgtttgggctgaacccctgccg
aataacgccttcgtttacccagggtactacactgcgacgctcttcatttacaacgcaact
gtagaaaacaccggctattacatgtgtacctatgaaacccaggagggtcctctggcggat
gaaccgggagaagacagtgaggcgggaatttatgtctttgtaccagatcccctggctcca
tttgttcccgagacgcctgataacttggtagtccccatggacacacctggagtccccatc
tcctgccgtgtgtctgacccctactttcacgtcgtcctgaggagtgtctccagcggagag
gagatgtctgtctactacgacaacaagatgggcttctttggaagcctgttgcctgggcag
taccagtgtgaaaccattgtgaacggccagacattcagaagtgtcatttatactgtgaag
gctgaggaccatgaagagaaggaggactttgacgtggaagtaaaagtcagtgaagagacg
gtgagagcagggaagccttttaacgtcacatgtgtcgctcccactggattgggctttcag
cagcagtggctccatcttaaaaaacaggctgtggacgcagttcagatgaaacagaccttt
cctgaccgggtcatctacaccctcagtatcccacaagccacctctcaggacagcggcacc
tacgagtgctccatcacccacaaaatcagcggaaaggtcagagtcagcatagcggctgtc
accgtcttcgaggaggattcctttgtggcactggaccatagtgggattctagctacggag
tttgtcagccttttagaggagacagagtttaccatcctcattaatgcctacccggcccct
aaagtgatgtggctgaaagacggcaaagccataccacagaactactacgtcctcaccaaa
acaagccaccttgaagggaatcggtaccaaagcattctgatattacggcagcctctggtg
aaagacaacgggaattacaccatcacagccctcagtggctctcacactgctcagttctcc
tttagcctcaaagtgaaagcccctactgcagtgatgttcccagcatcctcagcccctgtg
ctgctgccacaggtagaggagatggtcgtgcccctctacactcctttcaccttgacctgt
cggggagaggcaaaactagcatgggagacgccgctcgatgtggccgagaaaacacaggag
gacaacagcggcctgtttgtcaccaccatcactgtggacaaccctactgcaatgcacacc
ggttactacacatgcttgtacagtaataccactgaggatacagagcgcagcagcatctac
atctatgtgccagatcccgatgttccttttgtgccatcaccggcaccttttggcaaccat
gtcctgtctgaccacgaggagatggagatccagtgtcgggtgtctgatcccaggaccaac
gtgaccctggtaaacgttgacaccgatcaccctgtgcctagtttttatgacagcaagagg
ggcgctctgggagtattcactgctggaacatacgtctgtaagaccgtcataaacggggag
gaacactacagcgaggaatacatcgtccatggctggacaggtggcactgcaggtttcact
gaactgcatgttgaactgacagccaaacggactgcgctgctggtgggagacaccttaaca
gtcacctgtctggctcggggatctttgattctggacgaccactggaaataccctggcaaa
gtgactaatcgtgctgtcaaaacagtgcatgagaacaagagggatcaggagatcctttac
accctgacgatccagcaggcttcaaccaaagacagcggcatctactcttgctccatcact
gatattattagtaatgagagccagacaaaggaactcatcattcaagtttttgcaagtcag
tttatgtctatctcgccggagttcgaaggatatgaatcggcagagctggatgaggtccgg
gagttcagggcccaaatcacctccttccccagtgctcatgtctcttggcttaaagatggc
atcccactcagtgatgtgacagcggagatctccaccagcctgcggcagctcaacgagacc
agctacatgagtgttcttactctgatccgggccaaggaggaggacagcgggaactacacc
atccgggtcaagaatggagaccaaagtcaagacgttggatggatcctggaggtcaaagtg
cctgcagtcattgtggacctgatggacatccaccacggttcagccacgggccagtctgtg
gtgtgtattactagagggcagcccacacctgtggtggagtggttcatctgtaagaacatc
aaacgttgtgccaatgactcgtcttcctgggtgcccctcccaccaaactccacggagatc
acaatggattcacactttgatgaggacaataacctggagagccaggtcttgtttggccat
cttgaaaacacactgtctgtgcgctgcttggccaggaacgaaatggccacggtcagcagg
gaggtcaaattggtgtccagtggccctcacccagagctgactgtagctgctgctgtgctg
gtgctcctggtcattgtcatcatctcactcattgtcttggttgttatctggaaacagaag
ccacggtacgagatccgctggagggtcatagagtctgtgagcccagacggccatgagtac
atctatgtggatcccatgcagcttccctatgactccagatgggagttcccccgtgacaga
cttgtgctcggtcgtatcttgggctctggggcatttgggaaggtggtggagggcactgcc
tacggactcagccgctcccaacctgtcatgaaggtggcagtgaagatgctgaaacccacg
gcccgctccagtgagaaacaggccctcatgtctgaactgaagatcatgactcatcttgga
ccacatctcaacattgtcaacctcctgggagcctgcaccaagtcaggccctatatacatc
atcacagagtactgcttctacggggatctggtcaactacctgcacaagaacagggagacc
ttcctcagcctgaacacagagaaaactaaaaaagagctggacatctttggaatcaacccc
gcagatgagagcagcaggagctatgtgatcctgtctttcgagagcaaaggagactacatg
gatatgaagcaggctgacaacactcagtatgtgcccatgctggagatgagcaaaacctct
aagtactcagacatccaggggtctaacgatgaatacccaccttcttacgaccacccactc
tctcagaaaggatcaagtgagacggacgacctgttgtcagaagacatgaacgagggcctc
accaccaccgatctgctcagttttacctaccaggtggccaaaggcatggagtttctggct
tccaaaaattgtgtgcatcgggacctcgctgccaggaatgtcctcctatctcagggcaag
atagtgaagatctgtgactttggattggcccgagacatcatgcatgacaacaactatgtc
tccaaagggagcacttttctgcccgtgaagtggatggctccggagagtatttttgacaat
ctatacaccactcttagtgatgtttggtcctatggaatcttgctctgggagatattctcc
ttaggtggcaccccatacccaggaatggtcgtggattcaagcttctacaacaagatcaag
agtggatacaggatgtctaaaccagagcacgcccctcacgacgtgtatgaaatgatgatg
aaatgctggaacagcgagcccgagaagaggccttctttcctgggtctgagtgatactgta
gcttccttgctgccctccagctacaagaggcattatgagagggtgaaccatgagttcctg
aagagcgaccaccccgctgtgactcgggtgtgcgtggaaaacgatgacgcctacatcggc
atcacctacaagaaccaaggcaagctgaaggacagggaaagcggctttgacgaacagcgg
ctgagctctgatagtggctacatcattcccctcccggacctggaccctatatctgacgat
gaatatggaaagaggaacagacacggctctcagacatccgaggagagcgccattgagaca
ggctccagtagctccacttttgctgcacgtgagggcgagacactggaggacatcacgctg
ctggatgagatgtgtctggactgtagtgacctggtggaggacagcttcctgtga
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integrated database retrieval system
