KEGG   Micropterus salmoides (largemouth bass): 119901257
Entry
119901257         CDS       T07309                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
msam  Micropterus salmoides (largemouth bass)
Pathway
msam03030  DNA replication
msam03410  Base excision repair
msam03420  Nucleotide excision repair
msam03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:msam00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    119901257 (rfc4)
   03410 Base excision repair
    119901257 (rfc4)
   03420 Nucleotide excision repair
    119901257 (rfc4)
   03430 Mismatch repair
    119901257 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msam03032]
    119901257 (rfc4)
   03036 Chromosome and associated proteins [BR:msam03036]
    119901257 (rfc4)
   03400 DNA repair and recombination proteins [BR:msam03400]
    119901257 (rfc4)
DNA replication proteins [BR:msam03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    119901257 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    119901257 (rfc4)
Chromosome and associated proteins [BR:msam03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    119901257 (rfc4)
DNA repair and recombination proteins [BR:msam03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     119901257 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    119901257 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 AAA_lid_RFC1 Rad17 AAA_assoc_2 AAA_22 AAA_30 AAA_16 Gp44_lid AAA_11 DUF815 Mg_chelatase AAA_19 SLFN-g3_helicase KH_DUF2096_C RuvB_N AAA_24 AAA_14 AAA_28 Cdc6_lid AAA_5 ResIII DNAX_ATPase_lid AAA_7 AAA_3
Other DBs
NCBI-GeneID: 119901257
NCBI-ProteinID: XP_038572776
LinkDB
Position
Unknown
AA seq 358 aa
MQAFLKGATVQTSRPQKDKAAAGSSTEKKAKAIPWVEKYRPKCINEVAFQEEVVAVLKKS
VEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVKN
FAQLTVAGTRTDGKPCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLANQIQEERLLEICEKENLKYTKESIAALVKVSEGDLRKAITFL
QSAARLNVNKEITERTVIEIAGVIPPKMIDNLLQICFKGTFEKLEVAVRNMVDEGYAATQ
ILSQLHESIIEQDLSDKQKSAITEKMAVVGKCLSDGADEYLQMLSLCSVIMQQASQNN
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgcaggcttttttgaaaggagcaactgttcagacgtccagacctcaaaaagacaaggca
gcagcagggtccagtacagagaagaaagccaaggccataccttgggtagaaaaatacagg
ccgaagtgtattaatgaggtggcctttcaggaggaggtggtagcagtgctcaagaaatct
gtggaaggagcagatcttcccaacttgcttttctatggcccacctggaacaggaaagacc
tccaccatcctagctgctgccagagaactttatggtccagagctttacagacagagggtt
ctggagctcaatgcctctgatgaacgaggcatccaggtcatcagagagaaggtcaagaac
tttgctcagctcaccgtagctgggactcgcactgatgggaagccgtgtcccccttttaag
ataatcatcctggatgaagcggactccatgacggcaccagctcaggcggcactcaggcgg
accatggagaaggagtcccgcaccacccgcttctgtctcatctgtaactacatcagcagg
attattgagcccctgacctccagatgctccaagtttcgtttcaaacctctagcaaatcag
atccaagaagagcgcctgctggagatctgcgagaaggaaaacctcaagtataccaaagag
agtatagcagcgttggtgaaggtgtctgagggagacctgcggaaagccatcaccttcctg
cagagcgctgcgcgcctcaacgtcaacaaggagatcacagaacgcactgtgattgaaata
gctggggtcatccctcccaagatgattgacaacttgctccagatctgcttcaaaggaacg
tttgagaaactagaggttgccgtcaggaacatggtggatgaaggctatgcagccacacag
atcctgagtcagctccacgagtctatcatagagcaggacctgagtgacaagcagaagtca
gccatcacagagaagatggcagttgtgggcaaatgtctgtcagatggtgcagatgagtac
ctgcagatgttgagtctctgctcagttatcatgcagcaggcctcccagaacaactaa

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