Micropterus salmoides (largemouth bass): 119901839
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Entry
119901839 CDS
T07309
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119901839 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119901839 (ndc1)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119901839 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Med21
Motif
Other DBs
NCBI-GeneID:
119901839
NCBI-ProteinID:
XP_038573479
LinkDB
All DBs
Position
Unknown
AA seq
669 aa
AA seq
DB search
MFSAQQSCWFVRKVICWRAVASIAWAVLLLPPITAVFLILSRFHLLHPIKTTSECLSLLT
SASAIFTLILLCGVILIVGFLNLEYYTVIPTIACSKIALLGQLIHPRQFVNALAHCMMGI
IVAWCCAVTIGDRYETISYPCTQSDGSPQMYLNEHHLILLLSGAFVGFSHSLLGVIHNMN
YVSFHTVQQYKYLRFKGSLPLVVKCSATEALYSVRNYIFVYFFLGYIPRAWICKTLNLHL
NSSVQPLDSIAGLLDFSLLYHLWISALFLLFTWNITQLLFRIFVTEVYSFPVQPSFTEDA
HQSLPKVLTDKQPMVLKFLALQDLALLSQHSPSRRCEVFSLSQPGGHPHNWNAISKECLS
LLADLTQRLVAYHDTVATNGRAKSLSTGSERKTSSETSVTSGTEDLMSPRPTLMLKTPAS
VFARSIVGGPQSPLTAPFTPDLDSPFASPALRRLTAPVEQCSPWFGTVQSPHIMRRAPKL
WSTSTDSQANGSPQPSPASVPSPKQEPSKPSLLAQFLQNRKEQVKNFLAKRVLIMYLFNK
LPEASSQALFADSQAHIWALEGLSYLVQASFSEDQFGVVQTTLPSILSCMLVLQEAVDRH
FKLPHASSKPVRSTSSMGDSTHKTLRFALRATLKTAIYRITTTFGDHLNDVKMSAEHRKR
LQQFLEYKE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgttttctgcacagcaaagttgttggtttgtccgcaaggtgatttgctggagagctgtg
gccagcattgcttgggctgtcctgttgttgccacccatcacggcagtttttctaatcctc
agcaggttccatctcctccaccccatcaagacgacatcagaatgcctgtccctcttaaca
agtgcaagtgccatcttcaccctaatcctgctgtgtggagtgatcctcatagttgggttc
ctgaacctggagtattatacagttatcccaactattgcatgctcgaaaattgccctgttg
ggtcagctgatccaccctcgtcagtttgtcaacgccctggcccactgtatgatgggaata
atcgtggcttggtgctgtgccgtcaccatcggggacagatatgagacaatcagctatcct
tgcacacaaagtgatggttcccctcagatgtatctgaatgagcatcacctcatacttcta
ttgtctggagcctttgttggattctctcacagtctgctgggtgtgatccataacatgaac
tatgtctctttccacactgttcagcaatacaaataccttcgctttaagggatccctacct
ttggtggtgaaatgcagcgccactgaagcactctactctgtcagaaactacatatttgtg
tatttctttttgggatacattccaagagcatggatttgtaaaacactgaatcttcatttg
aacagttctgtccagcctcttgacagcatagctggactgctggacttctccctgctctac
cacctgtggatcagtgccttattcctccttttcacgtggaacatcacacagctgctcttt
aggatctttgttactgaggtgtacagttttcctgtacagccatcttttactgaggatgcc
caccagagtcttcctaaagttcttactgacaagcagccaatggttctgaagtttctagct
ctgcaggacttggctctgctgtctcaacacagcccatcacgacgctgtgaggtcttcagt
ctgagtcagccaggtggccatcctcataactggaacgccatcagtaaggagtgtctgtct
ctgctggctgatctgacccagagactcgttgcctatcacgacactgtagcaaccaacggc
agagccaaatcactgtctactgggagtgaaaggaagacttcatctgagacatcagtaacc
tcgggtaccgaagatctgatgagcccgaggcccactttaatgttaaaaactccagcttcg
gtctttgcacgctccattgttggcggcccacagagccctctgacggcaccattcactcct
gacctggatagcccttttgcctcccccgccctgcggcgtcttactgctcctgtggaacaa
tgctctccgtggttcggaacagtacagagcccacacatcatgaggagagccccaaaactc
tggtccacttccacagattcacaggccaatggcagtccccagccatcccctgcctcagtt
cctagtcccaaacaggaaccgtccaaaccaagtctcctggctcaattcctccaaaacaga
aaagaacaggttaaaaatttcttggcaaagcgggtgctgataatgtatttgtttaacaag
cttccagaagcctcgagtcaagctctgtttgcagacagccaggctcacatctgggcttta
gaagggctgtcttaccttgttcaagcctccttctcagaagatcagtttggggttgtacag
accacattacccagcattctaagttgcatgctggtcttacaagaggcagtagatcgacac
ttcaagctgcctcatgcttccagtaagcctgtgaggtcgaccagcagcatgggagactcc
actcacaaaacactgcgctttgctctcagggccactctcaagactgccatctacaggata
acaactacttttggagatcacttgaatgatgttaagatgtctgcagagcatcggaaaaga
ttacagcagtttctggagtacaaggaatag
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