Micropterus salmoides (largemouth bass): 119902144
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Entry
119902144 CDS
T07309
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04382
Cornified envelope formation
msam04510
Focal adhesion
msam04512
ECM-receptor interaction
msam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119902144
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119902144
09142 Cell motility
04820 Cytoskeleton in muscle cells
119902144
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119902144
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msam04147
]
119902144
00536 Glycosaminoglycan binding proteins [BR:
msam00536
]
119902144
Exosome [BR:
msam04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119902144
Glycosaminoglycan binding proteins [BR:
msam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119902144
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119902144
NCBI-ProteinID:
XP_038574042
LinkDB
All DBs
Position
Unknown
AA seq
1673 aa
AA seq
DB search
MGSSVFVKVTLCPLRWILVLVILVQQLNAGGIEGPCEGRDCSVCQCLPAKGAQGAPGKPG
QQGSRGPMGPRGREGPPGEKGTRGAEGSHGPQGPKGSRGNTGAPGFPGNDGSSGHPGAGG
EPGLPGVDGCNGTRGRPGVPGISGLDGLHGPPGSPGPKGIKGEPLYGAALPGLPGDRGRD
GKHGLPGRQGDIGPKGHTGPRGFPGLEGLEGPKGVRGLPGNPGGSLAGDKGDDGEQGLPG
PQGPEEVIEFPPDVLPHKGYKGDRGLPGPCGPKGISGGRGDCYNQEIKGEQGIPGFPGAR
GLPGFPGRDGLPGLEGFLGERGLPGLIGRIGPKGYPGDPGLPGPVNFHNGSDARGAKGDH
GHPGLAGLPGDPGLMGMHGPPGPPGLIIPEEPGLPGPRGPPGPKGYKGEPGRYNYFESVP
FPGLKGTKGPPGPKGVTGLPGPPGCGDYYCEPGNPGNPGDPGLKGSPGYKGLKGIKGCPG
ECHCLSDRGSIGPPGPTGYTGPPGFPGTQGVKGDPGLKGDEGPRGPQGLQGSPGLNGQKG
QKGDYVTDVKGAKGNQGVPGHSGPPGVTGRPGRDGPPGPAGDPGPPGAGYAGLPGLKGEP
GAAGPKGFPGLVGPHGPDFPGPKGLPGPKGDQGHPGPPGIPGRPGPLGETEVCCHEDAIG
SPGPKGESGEPGIPGEPGRQGLPGAPGYPGQKGMKGDDVEIGGISLPGPRGLNGDPGDPG
PRGISLDGPVGAPGLPGPPGWKGTPGDVFSARPGATGPPGRPGAVGTNGPRGIPGYPGSP
GIQGQPGPPGFKGEPGVNGDPGATGSPGPPCTVCDLYGPTGPPGLPGNPGLRGVPGNIGQ
KGFKGDEGLPGHGQLGPQGILGPPGLPGPTGPRGTSGPSGDPGIDGWQGQKGERGYPGRL
GVQGLPGHPGPPGPRGKQGERGFNGRPGDTGDPGLSGNKGSRGPPGLPGPLHYVNITKGP
EGLTGRMGQPGLQGPAGLKGSRGVPGDSGADGWPGPPGFKGSTGAPGRAAIPGPPGYPGI
KGFPGPRGYLGQRGDPGDPGPRGHSGIPGLPGFPGPKGEPGQSYGQPGLPGPKGLPGEDG
PSAPRGSPGDPGDPGPRGRSGQPGQLGIPGEPGRRGEPGFPGPRGTSGRPGLPGLPGHHG
GLGPPGPPGPYGPPGPPGEPGLDGLNGLRGTKGMEGASGIGIPGPPGPDGFPGVKGLKGQ
GGPSGATFPGDKGQRGPPGDTGLPGLPGEPGYPGKECSVPLPGPYGDVGYEGPPGPPGPV
GEPGLPVSNIFKGDPGPVGLPGLPGHKGVKGLPGPPGSQNYPGFTGPKGERGPAGPGGPL
GPKGRKGVPGPWGRKGVTGSAGDAGVKGAPGDSISGHLVLAPRGLPGPQGYPGSVGFPGD
VGPPGFPGHKGEKGPIGSVGLPGVPGPHGLDGPLGDPGDVGQRGFTGPQGIPGPPGDPGE
QGHRAALRSSFLLVIHSQAVQVPRCPEGSSQLWVGYSLVYLEGQEKSHTQDLGQAGSCLK
VFSTMPFSYCNKAACHFSSRNDKSYWLSTTAPIPMMPLFGQEISSHISRCVVCETVLPAV
AFHSQDHTVPACPPGWRSLWTGYSFLLHTGAGDEGGGQSLSSSGSCLKDFRTHPIIECQG
PRGSCHYFANLYSFWLTTVSQTEQFITPSPGTIKAADQQRRKASQCHVCLRKQ
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgggatcctcagtttttgttaaagtgaccctttgccccctcaggtggatccttgtcttg
gtcatcttggtgcagcagctcaatgcaggggggattgagggcccatgtgaaggtagagac
tgctctgtatgtcagtgtcttcctgccaaaggtgcacagggtgccccagggaagccaggc
cagcaaggctcccggggaccaatgggcccaaggggacgtgaagggccacctggagagaaa
ggcacgaggggagcagagggatcacatgggccacaggggcccaaaggaagccgtggcaat
accggtgctcctggatttcctggtaatgatggctcatcaggccaccctggagcaggtgga
gagcctggattgccaggagtggatggctgtaatgggacaaggggtcgaccaggagtccct
ggtatttctggtttagatggtctccatgggccgccgggatcacctggacctaaaggaatt
aaaggagaacctctgtatggtgctgcccttccaggacttcctggggaccgtggtagagat
gggaaacatggtctaccgggaagacaaggagacattgggcctaagggccacactggccct
cgtggctttcctggacttgagggcttggaaggacctaaaggtgtgagaggactaccaggc
aaccctggaggatcactggcaggcgataaaggtgacgatggtgaacaaggcctacctggc
ccacaaggaccagaagaagtcatagaatttcctccagatgtccttccacacaaaggttac
aagggagaccgcggtcttcctggaccatgtggaccaaagggcataagcggtggtagagga
gactgctacaatcaagaaattaaaggagaacaaggaatccctggttttcctggtgctcgg
ggtcttccaggatttcctggtagagatggactgccaggacttgagggtttccttggggag
agaggacttccaggtctcattggaagaattggaccaaagggttacccaggagatccaggt
ctccccggtcctgtgaactttcacaatggaagtgatgccagaggtgctaaaggtgaccat
gggcatcctggattggctggactcccaggtgatcctgggttaatgggcatgcatggacct
cctggcccaccagggttaataatcccagaggagccaggtctgcctggtccacgagggccc
cccggtcccaagggctataagggagagccaggaaggtacaattactttgaaagcgttccg
tttccaggactaaagggaactaaaggaccccccggacctaaaggtgtcacaggcctccca
ggtcctccaggatgtggagattactactgtgagcctggaaacccagggaaccctggagat
ccaggcctcaaaggatctcctggatacaaaggactcaaaggaatcaaaggctgtcctggg
gaatgtcattgtctgtctgatcggggaagcatagggccccctggtccaactggttataca
ggacctccaggatttcctggaactcaaggagttaagggagacccaggactgaaaggagat
gagggcccaagaggaccacaaggccttcaaggaagtcctggtttaaatggacagaagggt
caaaaaggtgactatgtgacagatgttaaaggtgccaagggtaaccaaggagtacctgga
cattctggtcctcctggggtaacaggcaggccaggacgtgatggcccccctggccctgct
ggagacccaggaccacctggtgctggatatgctggattacctggtctcaaaggtgagcct
ggtgctgcaggacccaaagggtttccagggcttgtagggccccatggtcctgatttccca
ggccctaaggggctacctggaccaaaaggagatcagggacatcctggcccccctggaatt
cctgggcgaccaggccctctaggtgaaactgaggtatgctgtcatgaagatgcaattgga
tcacctggtcctaagggtgaatcgggtgagccagggattccaggtgagccaggaagacag
ggtctcccaggagctccaggatacccaggccagaaaggcatgaaaggagatgacgttgaa
attggagggatcagcctgccaggacctcgaggtttaaatggggatccaggtgaccctggt
cccaggggaattagcctggatggccctgtaggcgctcctgggttaccaggacccccaggc
tggaagggtaccccaggagatgtcttctctgccaggccaggtgctactggcccacctggc
cgccctggggctgtggggactaacggaccccgtggcattcctggatacccagggtctcca
ggaatacagggccagcctggaccaccgggttttaaaggagagccaggagtcaatggtgac
cctggagccactggttccccaggcccaccctgcactgtgtgtgacctgtatggacctaca
ggccctccaggacttccaggaaaccctggactgaggggagtaccaggcaacattggtcaa
aagggttttaagggagatgaaggtctacctggtcatggacagttgggtccacaaggtatc
cttggccctcccggtttgccaggcccaactggaccaagaggcaccagtggtccctcagga
gatcctgggatagatggctggcaaggacagaaaggtgaaagaggataccctggcaggctt
ggggtccaaggtttaccaggtcatcctggccctccgggacccagaggtaaacagggagag
agggggtttaatggtcgcccaggtgacacaggagacccaggactctctggtaataaaggt
tcacgtggtccaccaggattaccaggaccacttcattacgtgaatataacaaaaggccca
gaaggacttacaggaaggatggggcaaccaggactacaaggacctgcaggcttaaagggc
tcaaggggagtgccaggtgattcaggggctgatggatggcctggtccgcctgggtttaaa
ggcagcaccggtgctccaggcagggcagcaataccaggacctcctggataccctggaatc
aaaggtttccctggtccaagaggatatcttggacagcgtggagatccgggagatccaggg
cctaggggacattcgggtatcccagggttgccgggatttcctgggcccaagggtgagcca
ggacagtcttatggacaacctggtctacctggacctaaaggattgccaggggaggatgga
ccaagtgcacccagagggagtccaggagatccaggtgacccaggaccccggggaaggtca
ggacagcctggacaactgggcattcctggggaaccaggaagacgaggagaaccaggtttc
cctgggcctcgtggcacatcaggtcgtccaggtcttccaggtcttccaggtcatcatgga
ggtctgggaccaccaggcccacctggcccatatggccctccagggccccctggggaacca
ggcctggatggactgaatgggcttagagggacaaaaggaatggaaggagcaagcggcata
ggtatccctggccctccaggaccagatggttttccaggagtaaaaggtctcaagggccag
ggagggccttcaggagccacttttcctggggataaaggacagaggggcccacctggcgac
acaggtcttccaggcctcccaggcgaacctggttaccctggcaaagaatgctctgtgcct
ttaccaggaccctatggagatgtaggatatgaaggacctccaggacctccaggtcctgtt
ggggaaccaggccttccagtcagcaacattttcaaaggagatccaggcccagttggcctt
cctgggttaccaggtcataagggggttaagggcctccccgggcctcctggatctcagaat
tacccaggctttacaggaccaaaaggtgagagaggtcctgctggtcccgggggtcctcta
ggacccaaaggtcggaaaggtgtccctgggccttggggccgcaagggagtaacaggctca
gcgggagatgcaggtgtcaaaggtgctcctggtgattccatcagtggacacctagtgttg
gctccccgtggacttccaggaccacaaggttacccaggatctgttggattccctggtgat
gtgggtcctcctggttttccaggacataaaggagagaaaggtcctatagggtctgtgggc
ctccctggtgtaccaggtcctcatggtcttgatggtcctttaggagatccaggagatgtg
ggtcagcgaggattcactggacctcagggtatcccaggtccaccaggggatccaggtgag
caaggccacagggcggcattgaggtcaagcttccttttggttatccatagccaggcagtt
caggtaccacggtgtcctgaaggcagcagtcagctttgggtgggctacagtctggtctac
ttggagggacaagagaagtctcacactcaagatctgggccaagctggctcctgcctcaag
gttttttccaccatgcctttctcctactgcaacaaagctgcctgtcacttctctagtcgc
aacgacaaatcttattggctctccaccaccgctcccatacccatgatgccactctttggc
caggagattagctcccacatcagccgctgtgtggtgtgtgagactgttttgcccgcagta
gcttttcacagccaggatcacacggtccctgcatgcccacctggctggaggagtctgtgg
acggggtactctttcctcctgcacacaggggctggtgatgagggtggtggccagtctctg
agttcttctggtagctgccttaaggacttccggactcaccccatcatagagtgccagggt
ccccgcggttcctgtcactactttgccaatctctacagtttttggctgactactgttagt
cagacagagcagtttatcaccccgagtcctggcaccatcaaggcagccgaccaacagcga
cgcaaggccagtcagtgtcatgtctgcctcagaaaacaatga
DBGET
integrated database retrieval system
