Micropterus salmoides (largemouth bass): 119902147
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Entry
119902147 CDS
T07309
Symbol
rc3h1b
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msam03000
]
119902147 (rc3h1b)
04121 Ubiquitin system [BR:
msam04121
]
119902147 (rc3h1b)
Transcription factors [BR:
msam03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
119902147 (rc3h1b)
Ubiquitin system [BR:
msam04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119902147 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf-CCCH_UNK
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
119902147
NCBI-ProteinID:
XP_038574047
LinkDB
All DBs
Position
Unknown
AA seq
1131 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLMPDDGLPLDVAVTRKPS
PLTNGSGAPSLPQLIARGATDTYELLRKPIKMDGGSPNAPGSPPDGMDSVPKPSMALPPH
AMAHPRMPMDHLSGVKHMPVIARGSPVYTQTQLTEMCYDTRPPPSASQYEPPQYPTGYPY
QQPQQYVPRDYMRNPPPPSESGPPYQDPYPGYGPPERPYQAPHSGPPFSYPHPPHHDRGR
HGTYTGPPPPPQPYPSQRDNLVRMSPAPLEVPPQTGQANSLYHQEPSARDRYPPDGYYPQ
GAQPPPMRAYVRGPSYSGSQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLSHPFPS
DYPPEYGEESSKTMMKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVMGPGTMEMMNVE
AKGLREPSMEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTPKMGYQTTAPVQAMVSNP
QNPNSKHMAMPEYTYGGHGGWGGASYPSHQAASSSQGHFSERLPTAAPDRELLKIELQQV
NQQITQQTQMRSMEPASNSLLLQRENSTLAGQPVQPSQGQAAAAQQQPKWPAGGASTTAV
SSEQLSLELHQVEREIGKRTREMALENQVTHDVQQYKMKPAENGQPEHKTQLEDISLALG
EVSNGSSSLQESAVGGSMLSLTNKTSALNLCSDPGATGSEMQKNGVVHSCS
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagttcctgctgtgcccaatctgcacacagaca
tttgaggagactgttcgccggcccatcagcttgggctgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgcaaggcttgtccctttgaccagacagccatcagcacagac
atcgagcagctacctgtcaacacagccctgttgcagctggtgggaggccaggttcctaag
gctcagccagttgccttgattacaagtccagaggactcgcagcattatgaggaggccagg
caatgtgtggaggagctggccctctatctcaagcctctcagcaacacccgaggtgtgggt
ctgagcagcacggcccagagcatgctgagtcgacccatgcagaggaaactggtaactctg
gtccactgccagctggtggaggaggagggccgcgttagagccatgagagctgcccgctcc
ctgggtgagcgaactgtcactgaactcatcttgcagcaccagaatccgcagcagctctcc
tccaatctgtgggctgctgtccgtgcacgaggatgtcagtttctaggcccagccatgcag
gaggaagctctaaagttggttcttcttgctctagaggatggctctgctctgtccaggaag
gtgttggttctctttgtagtgcagaggcttgagccacgcttcccccaggcctctaagact
agcataggccatgtggtacagctcctttacagggcctcctgctttaaggtgaccaaacgt
gatgaagactcatccctgatgcagctgaaagaggagttccgtacttacgaggctctgcgg
cgcgagcatgactctcagatagtgcagattgccatggagggcgggctgcgcatcgcacct
gaccagtggtcttctctgttatacggagatcaatctcacaagtcacacatgcagtctatt
atagataagctgcagaccccggcgtcttttgctcagagtgtccaggagctgactatcgcg
ctgcagaggactggagacccagccaacctcaacagactgcggccccacttggaactactg
gccaacattgatcccagtcctgacgccccccctcccacgtgggagcagcttgagaaaggg
ttggtagccgtgaaaacagtggtgcacggcctggtggacttcatccagaaccacagcaag
aaaggagctgaccctcaacagcctcctcagcacagcaagtacaagacatatatgtgtcgt
gacatgaagcagaagggaggctgtcctcgtggagccagctgcacctttgctcactctcag
gaagaactggagaagtatcgtaagatgaataagcgtctggcagctcgcctccctggctca
ggagggcttatgccagatgacggcctccctcttgatgtagcagtgacccggaagccttca
cccctcacaaatggcagtggtgcgccgtctttgccccagctcattgcccgtggcgccacc
gacacgtatgaactgctgcgaaaacccatcaagatggatggagggagtcccaatgctcca
ggatcaccacctgatggcatggactctgtgcccaaacccagcatggctctgccacctcat
gccatggcccacccaaggatgccaatggaccacctctctggggtgaagcacatgcctgtg
atagccagaggttcgccagtgtacacccagacacagctcactgagatgtgctatgacact
cgcccaccgccctctgcttctcagtatgagcccccacaataccccacagggtacccctac
caacagccacaacagtatgttcctcgggattacatgcgtaaccctcctccacccagtgag
tcaggacccccttaccaggatccctaccctggctatggccctccagagcgcccctatcag
gcccctcactctggcccacccttctcctaccctcaccccccacaccatgaccgaggtcgc
cacgggacctacactggcccacctcctcctccgcagccatacccatctcagagggataac
ctggtcagaatgagtcccgcacctctggaagtacccccgcaaacaggacaggctaactca
ctttaccaccaggagcccagtgcccgggatagataccctccagatggctactatccacaa
ggtgctcagcctccacccatgagggcatatgtcagggggccatcatatagtggttctcag
cccagcctggactacctgcaccgacgtcggcaagagctgttatcccagctggaggaaagg
aaggttatctctcctccaccattcgctgcctcccccactctttctcatcccttccccagc
gactaccctccagagtacggcgaggagagctccaaaaccatgatgaaatgcagagagccg
gactatgccggacaatactctccctggtcttgtgaaaccattggctcctacattggcaca
aaggatgccaaacccaaagacgttatgggtcctggtaccatggaaatgatgaatgtggag
gctaagggtctgagggaaccatcgatggaggctcctcggaggggtgctgaagtcaaggac
gatgaccctattatcccatttggcccccagcccactgtatcacgctttggtgccatctcc
cgcaccccaaagatgggctaccagaccaccgcgcctgtacaggctatggtctccaatccc
cagaatccaaactctaaacatatggccatgccagaatacacatatggaggccatggagga
tggggtggagcttcatacccctcccaccaggctgcttcctcctctcagggacactttagt
gagcgcctacctacagcagccccagacagagaactgcttaagattgagctgcagcaggtc
aaccagcagatcacccaacagacccagatgcgaagcatggagcctgcaagtaactcttta
ctgctgcagagggagaacagcacattggcaggccagcctgtgcagcccagccagggccag
gcagcagcagcccagcaacagcccaagtggccagcagggggcgcaagtacaacagctgtc
tccagcgaacagctaagccttgagctccaccaggtggagcgagagatcggcaagaggacc
cgtgagatggctttggaaaaccaagtaacccatgatgttcagcagtacaagatgaaacct
gcagaaaatgggcaaccagagcacaagactcagctggaagacatatccctggctcttggc
gaggtgtcaaacggctccagcagcctgcaagaaagtgcagtgggcgggtccatgctgtca
ctgaccaacaagacgtctgcactgaacctgtgctctgatcccggtgccactggctcagag
atgcagaagaatggcgttgtccattcctgctcttag
DBGET
integrated database retrieval system
