KEGG   Micropterus salmoides (largemouth bass): 119902569
Entry
119902569         CDS       T07309                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
msam  Micropterus salmoides (largemouth bass)
Pathway
msam04115  p53 signaling pathway
msam04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:msam00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    119902569 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    119902569 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:msam04121]
    119902569 (cop1)
Enzymes [BR:msam01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     119902569 (cop1)
Ubiquitin system [BR:msam04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    119902569 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     119902569 (cop1)
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd zf-RING_2 Beta-prop_EML Beta-prop_DCAF4 zf-RING_UBOX zf-C3HC4_4 Beta-prop_WDR90_POC16_2nd zf-C3HC4_3 zf-RING_5 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 WD40_like Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 zf-rbx1 zf-RING_10 WDR90_beta-prop_4th UvrD-helicase Sina_RING zf_C2H2_10
Other DBs
NCBI-GeneID: 119902569
NCBI-ProteinID: XP_038574779
LinkDB
Position
Unknown
AA seq 711 aa
MMSNNRPQQSAGGASSVPSTSSSSSSTGNTNGGGGSNAVTSNGNNSGNVVPSRTLAAAGE
GGSSVPTLAAVPSSRGGFASLSRPSASPGSRKKSLHQTPLYNGLLNSYEDKSNDFVCPIC
FEMIEEAHMTKCGHSFCFKCIRQSLEDSNRCPKCNYIVDNVDQLYPNFLVNELILKQKQR
SEEKRLKLDHPNGSRWQVFQDVLSPDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQI
LMEFLKEARRNKREQLEQLQKELSFLEEDIKRVEEMSGLYSPMMEAECTVPNVEAPSPAP
SCSSIIEAADYSHPPGFGGTTQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNKMSRIT
DEGRNLNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAG
VTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDG
FTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCC
VKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDS
QLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKF
DTVKSVLDKDKKEEDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 2136 nt   +upstreamnt  +downstreamnt
atgatgtcaaacaaccggccacagcagagcgccggtggggcgagttccgtgccaagcaca
agcagcagcagcagcagcacggggaacacaaacggtggcggtgggagcaacgccgtaaca
agtaatggtaacaattctggaaatgttgtaccctcccggaccctggcagcagccggcgag
ggcggctcgtcggtgccaactttggccgccgtgccgtcgtcccgtggcgggtttgcttct
ctgagcagaccctctgcgtccccgggcagcagaaagaaatccctccatcaaacacccctg
tacaacggtctcctgaattcatacgaagataaaagcaacgattttgtttgccccatctgc
ttcgaaatgatagaagaggcacacatgacaaagtgtgggcacagtttttgtttcaagtgt
atccgccagagtctggaggacagcaacagatgtcccaaatgtaactatattgtcgataac
gtggatcagctttacccaaactttcttgtgaacgaactgatccttaaacagaaacaaaga
tcagaggagaagaggctaaaattagatcatcctaatgggtctcggtggcaggtgttccag
gacgtgttgagtcctgaccaggagaacttggacctggcaaatgtcaatctgatgctggag
ctcctggtccagaagaaaaagcagctggaggcggaatcccaagcagctcagagacagatc
ctcatggagtttcttaaagaagccaggagaaacaagagagagcaactagagcaactacaa
aaagagctcagctttctcgaagaggacattaagcgtgttgaggaaatgagcgggctgtac
tctccaatgatggaggcagagtgtacagtgcctaatgttgaagctccctcaccagcaccc
agctgcagtagtattattgaggcagcagactacagccaccctccaggatttggtggaaca
acacaggggaagagacagacctggtacaacagtaccctggcgtcaaggaggaagaggctg
acggctcattttgaggatctggagcagtgctacttctccaacaaaatgtcacgcatcaca
gatgaagggaggaacctgaaccagctggatgattttatggagtgcctgtctaagttcacc
cgctacaactctgtgcggccgctcgctaccctctcatacgccagtgacctctataatggc
tccagtattgtctccagtattgagtttgaccgtgactgtgactactttgccatcgctggt
gttaccaagaagatcaaggtgtttgagtacggcacagtgatccaggatgcagtggacatc
cactaccctgttaatgaaatgacctgcaattctaaaatcagctgtatcagctggagcagt
tatcacaagaatcttctggccagcagtgactatgagggtactgtcatcctgtgggatggg
ttcactggccagaggtctaaagtctaccaggaacatgaaaaacggtgttggagtgttgac
ttcaatctgatggaccccaagctgttagcctctggttctgatgatgctaaagtgaagtta
tggtcaaccaatcttgacaactcagtggccagcatcgaggccaaggccaatgtctgctgt
gttaaattcagtccaacctccaggtatcacctggcctttggctgcgcagaccactgtgtc
cactactatgacctacgcaacactaagcagccaatcatggtattcaaaggccacaggaag
gcagtgtcctacgccaagtttgtcaacggagaagaaatagtttctgcttcaacagacagt
cagctgaagctgtggaatgtcaataaaccccactgcctgcgctccttcaagggtcacatc
aatgaaaagaactttgtgggcctggcatccaatggagactatgttgcctgtggcagtgaa
aacaactccctgtacctatactacaaaggactttccaagacactgttaacattcaagttt
gacacagtgaagagcgtcctggacaaggacaagaaggaagaagacaccaatgagtttgtc
agtgcagtctgctggagagccctgcctgatggagagtcaaatgtactgattgctgcaaac
agtcaaggaacaatcaaggtacttgagctcgtctga

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