KEGG   Micropterus salmoides (largemouth bass): 119902889
Entry
119902889         CDS       T07309                                 
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
  KO
K12850  pre-mRNA-splicing factor 38B
Organism
msam  Micropterus salmoides (largemouth bass)
Pathway
msam03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msam00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119902889 (prpf38b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:msam03041]
    119902889 (prpf38b)
Spliceosome [BR:msam03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    119902889 (prpf38b)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    119902889 (prpf38b)
SSDB
Motif
Pfam: PRP38
Other DBs
NCBI-GeneID: 119902889
NCBI-ProteinID: XP_038575200
LinkDB
Position
Unknown
AA seq 465 aa
MANVGNQLPTQAVSKTAPGKHGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTY
HEVVDEIYFKVTHAEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTR
KQLMGLITHTDSPYIRALGFMYIRYTQPPADLIEWYDSFLDDEEELDVKAGGGCVMTIGE
MLRSFLTKLEWFSTLFPRIPVPVQKMIDQQMKARPRKVAQKETQEDEAAFTESGKQGERR
RSRTPRRTPSPRRSPKRSRSRSHHREKERHGPSFDRELERERDRQRKEREGRDRDRGDRG
ERERRRSRSADRNQDRRERRRSRSGSRDRRSERRDKERDGGDDKSRRKDREHHKDRGVER
EKSRDKKNRGETDDRRHKDDRERHREERKAKRSSRSRSREKRHKSGGEEKSRKRELSHSR
DKDRERDGAQRPHKRSRSKERSHHPRESSNDHSKHSERRRSQSTE
NT seq 1398 nt   +upstreamnt  +downstreamnt
atggctaatgtcggaaaccagctaccaacacaggccgttagcaaaactgccccaggaaaa
catggaaatgtattgcccctgtggggcaacgaaaagactatgaacctcaacccaatgatt
cttacaaatgtgttgtcttcgccatatttcaaagttcagctctacgaactaaagacgtac
catgaagttgtggacgaaatctacttcaaggtaactcacgctgagccctgggagaaggga
agcagaaagactgcaggccagactggaatgtgcggaggggtgcgtggagttgggactggt
ggtattgtgtcgactgctttctgtctcctatacaaactgtttacactcaagttgactcgc
aaacagctgatgggtttgatcactcacacagactccccatacatcagagcccttggcttc
atgtacataagatatactcagcccccagcagatttgatagaatggtacgacagcttcctg
gatgatgaggaggagcttgacgtgaaggcaggaggcggctgtgtgatgaccatcggagag
atgctgcgctccttcttgaccaaactggagtggttctccacactgttcccccgtatccca
gtgcctgtgcagaaaatgattgaccagcagatgaaggctaggcctcgtaaggttgctcag
aaggagacgcaggaggacgaagccgccttcacagaatcagggaagcaaggggaacgacgc
cgctccaggacgcccagacggacaccaagccccagaaggtcacccaaacggtcaaggagc
aggagccaccaccgcgagaaagaacgccacggccccagctttgaccgagaactggagagg
gagcgtgaccgccagaggaaggagagggagggaagggatagggatagaggggaccggggg
gaaagggagcgacggcggtctcgcagcgcagacaggaaccaagaccgacgagaacgcaga
agaagccgcagtggcagccgggaccgcaggagcgaacgtagagacaaagaaagagacggc
ggggatgacaagagcaggaggaaggacagggaacaccataaagatagaggcgtggagagg
gagaagtccagggataagaagaacaggggagagaccgatgacaggaggcataaagacgac
agggagaggcacagagaagagaggaaggccaaaaggtcgagccggagtcgaagcagggag
aagagacacaaaagtggtggagaggagaagagcaggaagagagagcttagccacagcaga
gataaagacagggagagagacggagcacagcgtcctcacaaacgtagtcgtagcaaagag
aggagccatcatccccgagagtccagtaatgaccatagtaaacatagtgaacgcagacgg
agtcagagcactgagtaa

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