Micropterus salmoides (largemouth bass): 119903297
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Entry
119903297 CDS
T07309
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04137
Mitophagy - animal
msam04140
Autophagy - animal
msam04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119903297
04137 Mitophagy - animal
119903297
04148 Efferocytosis
119903297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msam03000
]
119903297
Transcription factors [BR:
msam03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
119903297
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
ATP-synt_VA_C
Motif
Other DBs
NCBI-GeneID:
119903297
NCBI-ProteinID:
XP_038575406
LinkDB
All DBs
Position
Unknown
AA seq
774 aa
AA seq
DB search
MSAFVVCIVGSKRGCGQTVADPPPVSRRVSSERRKEKSRDAARCRRGKESEVFYELAQEL
PLPHSVSSSLDKASIMRLTISYLRMRKLLGTDKPMAEEETELDVLLNSSYLKALEGFLMV
LSEDGDMIYLSENVNKCLGLAQFDLTGHSVFDYIHPCDQEELREMLVHKTGSKKTKEPNT
ERSFFLRMKCTLTSRGRTVNVKSATWKVLHCSGHVRVYYSHTEQTPNGQKEPPIPYLVLI
CDPIQHPSNIEVPLDTKTFLSRHTMDMKFTYCDERITELMGYNPEDLLNRSVYEYYHALD
SDHLTKTHHNLFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLS
GIQEEKLILSLEQTEDVKPVKEEEEQEEEKDVVESSPSEMSPILLKEEEKGPKVNVFKLL
TDMVKTQPLASLYDQLKEVPEALTLLAPAAGDTIISLDFSCPDSEIQLLKDVPLYNDVML
PSTSDKLALPLSPLPPSEPLHVTTTTTTTTSEDTKDGDYAPAPSTTPTSSAEAESPLEFC
FPMDSEMSSDFKLDLVEKLFAIDTEPKTPFTTQAMDDLDLEMLAPYIPMDDDFQLRCLTP
EEPLSCGPVKSLQSSPIHITQDIHSYPSSPFISPGSRTASPAPPEPVNALHLATIFAKST
PDNTVSLRTQAAQSTQRKRKLGDIKEMIGQETLPQEQLKQGKKLKASESGTTRTILLLPS
DMVSRLLGTTSESTGTLFTLPQLTRDDCEVNAPLQGRQYLLQGEELMRALDHIN
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctttcgtagtgtgcatagtgggatcaaaacgaggttgtggccagactgtggct
gacccaccccctgtctcccgcagggtgagctcggagcgtaggaaggagaagtccagggat
gcagcgcgatgccggcgtgggaaggagtcggaggtgttctacgagctggcccaggagctg
cctctgccccacagcgtcagctccagtctggacaaggcgtcaataatgaggctcaccatc
agctacctgcgcatgagaaaactgctcggcactgataagccaatggcagaggaagaaaca
gagctggatgtcctactcaacagctcctacctaaaggccctggaaggcttccttatggtg
ctgtctgaagatggagatatgatctatctctccgagaatgtcaacaagtgcctcgggctg
gcacagtttgacctgactggacacagcgtgtttgactacatacatccctgtgaccaggag
gagctgagggagatgctggtccacaaaactggctccaaaaagaccaaggaaccaaacaca
gagcgcagcttcttcctccgaatgaaatgcactctcacaagcaggggccgcaccgtcaat
gtcaaatcagctacatggaaggtgctccactgctcaggtcatgttcgtgtatattacagc
cacactgagcagactcccaacgggcaaaaggagccacctattccatacctggttttgatc
tgtgaccccatccaacacccctccaacattgaggtccctctggacaccaaaaccttcctc
agccgccatacaatggacatgaagttcacatattgtgacgagaggatcactgagctcatg
ggttataatccagaggacctgttgaatcgttctgtgtatgagtactatcatgctctggac
tcggaccatcttaccaagactcatcacaacttgtttgcaaagggccaggtcagcacaggc
cagtaccggatgttggccaagagaggaggctttgtgtgggtggaaacccaagccactgtc
atctacaataacaagaactcccagccacagtgcgttgtctgtgtcaactttgtgctcagt
ggcatccaggaggaaaaactgatcttgtctttggagcagactgaggacgtaaagccagtg
aaggaggaggaggagcaggaggaagaaaaggatgtagtcgagagcagcccgtccgaaatg
tctccaatcctgctgaaggaggaggagaagggcccaaaggtgaatgtgttcaaactgttg
actgatatggtaaagacccagccgctggctagcctctatgaccagctgaaggaagtgcct
gaggctctcaccctgctggccccagctgctggagacacaatcatctccctggacttcagc
tgccctgattcagagatccagctgctgaaggatgtccctctctacaacgatgtaatgctt
ccctccacgagtgacaagctggctctgcctctttcccctctgccgcccagcgagcctctc
catgtcaccaccaccaccaccaccacaacctctgaggatacaaaagacggggactatgct
ccagccccatccactacaccaaccagttccgcagaggctgagagtccgctggagttttgt
ttccccatggactccgaaatgagctcagatttcaaactggacttggtggagaagctgttt
gccattgatacagagcccaagacccccttcaccacacaggcgatggacgacttggacctg
gagatgttggctccctacatccccatggacgacgacttccagctgcgctgtctgacccca
gaggagcctctgtcttgtggaccagtcaaatcccttcagagttctccaatccacatcaca
caggacatccacagctatcccagctccccattcatctcaccaggcagtcgcacagcttcc
ccagcaccgcctgagccagtaaacgcccttcatcttgccaccatctttgctaagagcacc
ccggacaacacagtgtcgctcaggacccaggcagctcagagcacacagcgcaaaagaaaa
ctgggtgacataaaagagatgattggacaggaaactctgcctcaggaacaactgaagcag
ggcaaaaagctgaaggcctccgagtcgggaacaaccaggaccatacttctgttgccttca
gatatggtgagtcgtctgctgggcaccacgtcggagagcaccggcaccctcttcacgctg
ccgcagctcacccgcgacgactgcgaggtcaacgcccccttacagggtcgtcagtatctg
ctgcagggggaggagctgatgcgtgctctggaccacatcaactga
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