Micropterus salmoides (largemouth bass): 119903413
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Entry
119903413 CDS
T07309
Symbol
pms1
Name
(RefSeq) LOW QUALITY PROTEIN: PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msam03400
]
119903413 (pms1)
DNA repair and recombination proteins [BR:
msam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
119903413 (pms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
119903413
NCBI-ProteinID:
XP_038575485
LinkDB
All DBs
Position
Unknown
AA seq
921 aa
AA seq
DB search
MKQLPPDTVRLLSSSQVITSMVNVVKELMENALDAGSSSIDVKLENYGLDRIEVRDNGHG
IKAADTPVMAVRHFTSKICSHEDLERLETYGFRGEALGSICAVAEVAVITKTEEDDISTQ
YTLNFTGEIVSQKPSHLGQGTTVSVLKLFKNLPVRRQYYSSTKKCKEELKKVQDLLMAYA
IIKPDLRLTLVHNRVVIWQKAKVADHRSALLATLGPSTVANLLPCHHHQEQPEIILDGFF
PKPGADYSSTSSSNPDKTFIFVNNRPVHQKDIMKLLRQHYAAQYSDDPARNRYPTLMLKI
TVSPSSVDVNLTPDKTQVLLHDKEAVLTAVDAFLVSLYGYRPSGDPPAEKQLGHETPPSP
SSPLQTDATADNEQSVERDGILSNHNGSFLNDAPKHSDTAPSTAISTDALLGRQTSNSSS
SSSVAEDWIVNKIPAGLESNFSLCDDETAQSCSQTAETASAGKSPERPEDNAVSRSETCK
DQLSAEDWSRGTALTDPVSREPLQPVKIHQPSKNSHSGSDEIKSQSSSNKKMFNAITEKR
AALTAYDLISNRAMRAPLSPAALFEKEARAEVLREKPAASLQDISVAINERWKNLREDDR
KKYEEKAKKHLEHHDQRTKLASAEGPTETSVSTPRGHAQNQKRKAPQSNQQLLDELFSAH
PEKKMRKPAPKPSQPLPCSVAALRLQLQRLSSQRSAVPRGLRLVNRLASQSAWVILCGQR
LMLLNPFRVEEALLFKRLLENNILPAVSLQNPIQLTDGSLGGAEYTEALCNMEKQSPELN
GGAFFSDPRLVANGFKIQLTPGLTSAERHLEVTAMADCVPFLCVEDLREILTAVVHRKAR
SVHECRPLKVTNYLQGEAVRLARQLPTNLSREDVEETLLRMEQQLGESTRTCIHGRPFLQ
HLSDIPSTDQDAKALLRPLEL
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagctgcctccagatactgtgcggctgctgtccagctcccaggtcatcacctct
atggtgaacgttgtgaaagaattgatggagaatgctctggatgctgggtcttcaagcatt
gatgttaaactggaaaactacggtttggaccgtatagaagtgcgtgataatggccatgga
atcaaagctgcagatactcctgtgatggccgtgagacatttcacttcaaagatctgcagc
cacgaggacctggagcgactggagacgtacggctttcgaggagaagcgctgggctccatc
tgcgccgtggcagaggtggctgtcatcacaaagacagaggaggatgacatcagcacccag
tacacccttaacttcacaggggagattgtttctcagaagccgtctcacttgggtcaaggt
acaacagtgagtgtactgaagcttttcaagaatctcccagtgagacggcagtactattcc
tctaccaagaagtgcaaggaggaactgaagaaagtgcaggacctgctgatggcctacgcc
attataaaaccagacctgaggctcacactcgttcacaatagggtggtgatttggcagaag
gccaaggtggccgatcacagaagtgcactccttgctacgctggggcccagtaccgttgcc
aacctgctcccttgccaccatcaccaagagcaaccagagatcattttagacggctttttt
ccaaagcctggggcggattactcttctacaagttcatctaaccctgacaaaacattcata
tttgtcaacaaccggcctgtccaccaaaaagatataatgaagttgttgcgtcaacactac
gctgctcagtattcggatgacccagcccgaaaccgctatcccaccctcatgcttaaaatt
acagtttcaccctcctcagtcgacgtaaacctgacaccggacaagacccaggtgcttctt
catgacaaggaggctgtgctgaccgccgtagatgcatttctagtttcgctctatggctat
cggcccagtggtgaccccccagctgagaagcagctcggccacgagacacctccctcaccg
tctagtcctttgcagactgatgctacggccgacaatgaacagagtgtagagagggatggc
attctctcaaaccacaatggtagcttcctcaacgatgctcctaaacacagtgacacagct
ccctctacagcaataagcactgatgcattattgggccgccagacctcaaacagcagctct
tcgtcctctgtagcagaggactggattgtcaacaagatcccagccgggcttgagtctaac
ttttctctgtgtgacgatgaaacagctcagagctgctctcagacagcagaaacagcttca
gcaggcaagtcccctgagagacctgaggacaatgctgtgtcacggtcagagacatgcaaa
gaccagttatcagctgaggactggagccgcgggacggctttaactgaccccgtatcacga
gagcccctgcagcccgtcaaaatccatcaaccctcaaagaacagccactctggctctgat
gaaatcaagagtcagagcagctcaaacaagaagatgttcaacgccataacagagaagcgg
gctgctctgacggcctacgacctgatcagcaaccgcgccatgagggcaccgctctctcct
gccgccctgttcgagaaggaggccagagcagaggtcctcagggagaaacccgcagccagc
ctgcaggatatcagcgtcgccattaatgagaggtggaaaaatctgagggaggacgaccgt
aagaagtatgaggagaaggcaaaaaaacacctggaacaccatgaccaaaggacgaagttg
gcctctgctgaaggccctacagagacgagcgtgagcaccccaaggggccatgcacagaat
cagaaacgcaaggcccctcagtccaaccagcagctgctggacgagctcttctctgcacac
cccgaaaagaagatgaggaagcctgcgcctaagccctcgcagcccctcccctgcagcgtg
gctgcccttcggctgcagcttcagcgcctttcatcccagagaagtgcagtaccacggggc
ctccgtcttgtaaaccggctggcctctcagagtgcctgggtcattttatgtggtcagagg
ctcatgttgttaaacccatttcgagtggaggaagccttgctgtttaagagacttctagag
aataatatacttccagcagtgagtctgcagaaccctatacagttaacagatggaagtctg
gggggagctgaatatactgaggctttgtgcaacatggagaagcaaagtcctgagctaaac
ggaggagcctttttctctgaccccaggcttgtagctaatgggtttaaaatccaactcact
ccaggcctcacgtcagccgagagacatctggaagtgacagcaatggcagactgcgtgcct
ttcctctgtgtggaggacctcagggagatcctgactgcagttgttcacaggaaagccagg
agcgtgcacgagtgccggccacttaaagtcacaaactacctacaaggtgaagcagtacga
cttgcccgtcagttgcctacaaatttatccagggaagatgtggaggaaacccttctacgg
atggaacagcagcttggtgagagcacccggacctgcatccatggacgaccatttctccaa
cacctatctgacatcccttctacagaccaggatgctaaagctctgctgaggcctttagag
ctgtaa
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