Micropterus salmoides (largemouth bass): 119903834
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Entry
119903834 CDS
T07309
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msam04147
]
119903834
00535 Proteoglycans [BR:
msam00535
]
119903834
00536 Glycosaminoglycan binding proteins [BR:
msam00536
]
119903834
Exosome [BR:
msam04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119903834
Proteoglycans [BR:
msam00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
119903834
Glycosaminoglycan binding proteins [BR:
msam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119903834
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
119903834
NCBI-ProteinID:
XP_038576010
LinkDB
All DBs
Position
Unknown
AA seq
1342 aa
AA seq
DB search
MKMRCCSRLERLLCCVLILVSPAASRWPEDSAVSLLQLIGDPPPNEITQIYGPDNSPGFV
FAPDANTGQLARAHLPNPFYRDFALIFNLKPTSDKGGVIFSVTDASQQIMYVGVKLSAVQ
GSNQNVILYYTEPDSQQSYEAARFLVPSMRDTWTRFAIAVRDDKVMFYLNCDIDPQVMRI
ERSPDEMELEAGAGVFVGQAGGADPNKFLGVIGELRVVGDPRAAERHCEEDEDDSDMASG
EGSAYEESRTTKSPMEKHIWTTTPKSSQPIPPPLTRKEEVSNARETGPVGTKGEKGDKGE
RGDKGDRGPIGPKGESGSSTGSSSRGGARGEKGEPGEKGAKGSAGFGYQGNKGEPGPAGP
PGPPGPPGPATEFSVGSDGSVASTVPGPRGPAGPPGSPGPQGPPGADGEPGDPGEDGKTG
ADGPPGFPGTPGDPGPKGEKGDRGEGQPGPRGPPGPPGPGFRSTFVDMEGSGFPDLESVR
GLPGLPGPPGPPGPPGPSTAGTAMGSGAFGPPGKDGAPGKPGLPGLPGKDGVSGVPGPKG
EKGDSGELGLPGAVGQKGAQGDSGLPGPAGEPGLAGLPGPIGPVGPPGPPGPPGPSYRVG
FDDMEGSSGGFTNGLPGIRGPEGKQGPPGLPGLPGKPGFPGILGQKGNEGPVGRDGQPGL
DGFPGPQGPKGEKGDKGERGDAGRDGTGLPGPPGPPGPPGQIVYQTSGNFDGGVGRVGSQ
GGPGLPGQAGFPGPMGPKGDRGEPGHPGSAVKGEKGEPGLVIGPDGNLLSLDGLRGLKGD
RGPPGPVGPPGPYGPAGLKGEMGMPGRPGRPGVNGYKGEKGEGGAGYGYPGVPGQPGPPG
PPGPPGPAVPLDRFNRYDETSRSYQAIKGEKGERGDQGIPGTASNFDIYTFKNELKGERG
DSGVKGEKGEPGGGYYDPRYGGVQGPPGPPGKPGLQGPKGDSVMGPPGPQGPSGPPGIGY
DGRPGPPGPPGPPGPQGSLPEAPNHSVIVPGPPGPPGAPGSPGVSSGVTVLRSYDTMVAT
ARRQTEGSLIYIIDRADLYLRVRDGLRQVMLGEYSPFFRDLENEVAEVQPPPVILYPQSQ
DQSQSHSNGAGHYSQGASIRPIQPPPHPPVDPRYPPHYDPRFPDTRHTGQTDGRLATQQT
EDRYPVTPQRRPSPPVLQPHVDTAGSGLHLIALNAPHTGNMRGIRGADFLCFQQARAIGL
KGTFRAFLSSKLQDLYTIVRRSDRESVPIVNLKDQLLFSSWESMFGDNASKMRENVPIYS
FDGRDILRDSAWPEKMVWHGSSNKGHRQTDQYCETWRAGDRAVTGLASSLQSGHLLQQSS
SSCSGSYIVLCIENAATSHSKK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaggtgttgctcacggctggagcgccttctctgctgcgtccttattctcgtc
agtccagctgcatcgcggtggccagaagacagtgcagtgtccctgctacagctgattggg
gatcctccaccaaatgagatcacccagatctatgggcccgacaacagccccggctttgtc
ttcgcccccgatgccaacacgggccagttggcccgtgcccacctgccgaacccattctac
agagacttcgccctcatcttcaaccttaaacccacctctgacaagggtggcgtcatcttc
tctgtcacagatgcctcacagcagatcatgtatgtgggtgttaaactgtcagccgtgcag
ggcagcaaccagaatgtcatcctgtactacacagagcctgactcacagcagtcgtatgag
gccgccaggttccttgtgccctctatgagggatacctggactcgatttgccatcgctgta
agggatgacaaggtgatgttctacctcaactgtgacatagaccctcaggtgatgcgcatt
gagaggtccccggacgagatggagctggaggccggtgctggggtctttgttgggcaagct
ggaggagccgatcctaataagtttctgggggtgatcggtgagctgagggtggtgggagac
ccccgtgctgctgagaggcactgtgaagaggatgaggatgactcggatatggcgtcaggg
gaaggaagcgcctatgaggaatccagaaccacaaaatcacccatggagaaacatatatgg
acgaccactcccaagtcttcccagcccattccgccacctctgacaaggaaagaggaggtt
tcgaatgcaagagaaacagggccagttggaactaaaggagaaaagggcgacaaaggggag
agaggagacaaaggagacaggggtccaatagggccgaagggagaatccggctccagcact
ggctccagctcacggggtggagcccgtggagagaagggggaaccaggggaaaagggagca
aagggcagtgcaggctttggctaccaaggaaacaagggagaacctggccctgctggcccc
cctggcccccctggccctccagggcccgcaactgagttttcagtaggcagtgacggctca
gttgcttcaacagtcccgggaccccgaggaccagctggaccacctggctccccgggcccc
cagggaccaccaggagctgatggagagccaggtgatcctggggaggatggaaaaacgggt
gctgatggacctccaggcttcccaggaaccccaggtgaccctggacctaaaggagagaag
ggagaccgtggtgagggtcaacctggacccaggggacctccgggacctccaggaccagga
ttcagatctacttttgtggacatggaaggatcagggttccctgatttggaatctgttcgg
ggactgcctggtctgcccggcccccctggtccccctggtcctcctggtccctctacagca
ggcacagcaatgggttctggggcgttcggaccaccaggaaaggacggggcgcccggtaaa
cctggcttgcctggtttgcccggtaaagatggtgtctctggagttcctggtcccaaagga
gaaaagggtgattcaggtgagctgggtttacctggagcagttggacagaagggagctcaa
ggagactctggtttaccagggcctgcaggagagcccggactggctggtctgcctggacct
attggaccagttgggccacctgggcctcccgggcctcctggaccgagttatcgggttgga
tttgatgacatggagggctctagtggaggttttaccaatggacttcctggtatcagagga
ccagaaggaaaacagggtcctcctggcttgcctggacttccgggtaaacctgggttcccg
ggtattttaggtcagaagggcaatgaaggtcctgtaggaagagatgggcaacctggattg
gatggcttccctggacctcagggaccaaagggtgagaaaggggacaaaggagagaggggt
gacgcaggtcgagatggaaccggactcccaggtccacccggcccacctggaccaccagga
caaatcgtctaccagacatccggcaattttgatggtggtgttggcagggttgggtctcag
ggaggacctggtttacctggtcaagctggattccctggtcctatgggaccaaagggtgac
agaggagaacccggccatccaggctctgcagtgaagggtgagaaaggtgagcctggctta
gtgatcggaccggatggaaatcttctgtctctggatgggcttagaggtctgaagggagac
agaggacctcctggacctgttggaccccctggtccgtatgggcctgcaggattaaagggt
gaaatgggaatgccaggaagacctggtcgccctggtgtaaatggatacaagggtgagaaa
ggagagggaggagccggctacggctacccaggagtccctggccagccagggccacctgga
ccacctggaccccctgggccagctgttcccttagatcgcttcaatcgctatgatgaaact
tcaaggagttaccaagcaattaaaggggaaaaaggagagcgtggtgatcaaggaatccca
ggaacagcctctaattttgacatttacacattcaagaatgaactgaagggagagcgtgga
gactcaggtgtgaagggagaaaagggagagcctggtggtggatattatgatccacgttat
ggaggagtacaaggcccaccggggcctcctggcaaaccaggcctgcagggtccaaaagga
gattccgtaatgggccctcctggaccccaggggccatcaggaccaccaggaattggttac
gatgggcgcccaggtcctccaggaccacctggacctccaggaccccaaggatcacttcct
gaagcacccaatcactccgtcattgttcccggacctcctggtcctcctggtgcacctgga
agtcctggtgtctcctctggggttacagttttgaggtcatatgacacaatggttgccact
gccagacggcagacagagggcagcctcatctacatcatagacagagcagacctctatttg
agagtacgcgatggactgcggcaagtcatgcttggagagtacagtcccttcttcagagat
ctggagaacgaggtggcagaggtccagcctccacctgtgattctgtacccccagtcccag
gaccagtcccagtcccacagcaacggagctggccattactcccagggagcttccattcga
cccattcagccgccaccacacccccctgtagaccccagatacccccctcactatgatccc
agattcccagacacgagacacacaggtcagacagatggaagactggccacccagcagact
gaggacagataccctgtcactccgcagcgacgacccagcccacctgtactgcagccccat
gtggacacagcaggatcgggacttcatctcatcgccttgaacgcccctcacactggtaac
atgcgaggaattcgcggggcagacttcctgtgcttccagcaggcccgcgctataggcctg
aaggggaccttcagagctttcctgtcctccaaacttcaggacctctacaccattgtccgc
aggtcggaccgggagagcgtgcccatcgtgaacctcaaggaccaattattgttcagcagt
tgggagtctatgttcggtgacaatgcaagcaaaatgagggagaatgtacctatctactcc
tttgatggtagagacatcctcagggatagcgcatggccagagaaaatggtctggcatgga
tcaagcaacaaaggccaccggcaaacagaccagtactgcgaaacatggcgggcgggcgac
cgcgctgtgactggtctggcatcatcactacagagcggccacctcctgcagcaatcctcc
agtagctgttctggctcctacatcgtcttgtgtattgagaacgccgcaacatcacactcc
aaaaaataa
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