Micropterus salmoides (largemouth bass): 119904231
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Entry
119904231 CDS
T07309
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04382
Cornified envelope formation
msam04510
Focal adhesion
msam04512
ECM-receptor interaction
msam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119904231
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119904231
09142 Cell motility
04820 Cytoskeleton in muscle cells
119904231
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119904231
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msam04147
]
119904231
00536 Glycosaminoglycan binding proteins [BR:
msam00536
]
119904231
Exosome [BR:
msam04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119904231
Glycosaminoglycan binding proteins [BR:
msam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119904231
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119904231
NCBI-ProteinID:
XP_038576657
LinkDB
All DBs
Position
Unknown
AA seq
1640 aa
AA seq
DB search
MLLPCGTLLLLAALYSSVDLAGAEGCGASCGTCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGPMGPKGDLGEPGGPGLKGVRGPPGLPGFPGNPGLPGINGNDGPPGQPGIPGCN
GTKGDRGRDGTPGFAGLQGPPGIPGLPGLKGDPGGVIGIVPLKGDRGFPGAPGLPGSAGP
SGPTGPPGPRGYQGPKGDPGPPGPPGDKGDRLAFEGEKGDKGEQGFRGPPGPPGPPAPAV
EGHTTVHVAGPPGEIGPPGDKGEKGFCIPHHDGVKGDHGPPGPRGKPGKDGEDGPKGEKG
FPGNPGFTGSPGSKGERGPPGFGNGAPGPPGPRGLPGLNGEKGFPGPQGEAGPPGRHIEG
PRGERGQKGDMGEKGDRGMEGESLIGPPGQPGLSGPPGPPGQPIDPNECNIAKGAPGPPG
PPGLRGEVGQKGDTGDTCVQCESFGPPGLPGPQGPKGDRGPPGPVGSKGDKGRSGSPGEP
GRHGSQGPPGLIGAPGAVGEPGDVFVAPGLKGDKGLPGQSGSPGQPGRDGLPGRDGTPGF
PGPKGEPAKEGIKGERGPAGDPGLIGTPGERGPPGVPGFGRPGESGEKGNPGRQGFPGAP
GVPGIKGEPGTGVSTPGPQGVPGTQGEPGRPGVKGDRGLTGDPGLPGFPGLKGEHGAPGI
GFPGPTGPKGISGIPGAQGLPGEPGKPGKDGLTGQPGAPGQKGEPGRGLPGPKGSQGPPG
IIGFAGEKGNIGLPGVAGREGQTGPPGPQGVKGEVGPPGPPGQVGLPGAPGKGSPGAPGP
QGPPGEPGPFGREGVKGEKGYPGPPGLDMPGPHGEKGDPGFPGDPGPKGLPGPQGLPGRD
GLFGTPGPKGEMGVIGTPGVPGFPGPPGTPGSPGLRGDPGIIGPKGDTGEAGSKGERGEP
GLQGPPGNMSEVDMEHMKGEKGDRGDTGEPGATGQKGYRGVPGDAGMPGKDGDPGSPGKP
GEKGDPGSPGEPGSMGPPGQKGSLGEMGIPGISGPKGTKGDIGTPGHPGFRGTDGLKGDK
GAAGEPGIGLPGLPGEKGLTGQPGFPGLQGDKGERGHEGMPGKPGPQGSKGEKGSLGYQG
QPGRPGEKGIPGLPGSAGEPGRDGRPGEGGLQGPPGVPGEKGDPGVDGIPGTSGERGDPG
LPGRGFPGPPGVLGSKGDKGSPGFPGTPGHPGVPGIKGDKGLAGSEGPQGEPGERGFPGA
SLEGPKGDRGETGQPGEGGSPGAPGPSGVPGRDGLKGEKGDQGNPGFQGETGHKGDPGLP
GLPGQPGLPGIDGLKGEMGLQGVPGFPGAKGNVGDLGFKGEFGDRGFPGEKGAEGPPGPP
GQHTFIKGDIGLPGIQGLPGPQGPSGPYGLKGQQGVTGVPGPKGEDGLPGYHGQPGAKGE
PGLPGPQGPRGHSGPPGPDGVPGQVGPPGPSSMDHGFLVTRHSQTVEIPQCPEGTSLIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGESIKPFISRCAVCEAPAMVIAIHSQTIMIPQCPHGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFTKPVPTT
LKAGNLRTHISRCQVCMKRT
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtgcggcaccctgttactgctggcggctctctactcaagtgtagacctg
gcaggggctgagggttgtggggcatcatgtggaacatgtgactgcagtggtgtaaaagga
gcaaagggtgagcgtggatttcctggccttcaaggtaatatgggattccctggtatgcag
ggacctgaagggcctccagggccaatggggcccaagggagatttgggtgaacctgggggt
cctggactgaaaggagtgcggggtcctcctggtctgccaggttttccaggaaacccggga
ctaccaggcatcaatggaaatgacggcccaccaggtcagccaggtatcccaggatgcaat
gggactaaaggagacagaggaagggatggcactcccggttttgctggtcttcagggacct
cctggcatcccaggacttcctggattgaagggcgatcctggtggtgtgattgggattgtt
cccctgaaaggagacagaggattccctggcgcacctggattacctggatcagctggacct
tctggacctactggacctcctggacctcgtggctatcaaggacccaaaggtgatcctggc
ccccctggtccacccggagacaagggtgacaggttggcctttgaaggcgagaaaggagat
aagggtgaacaaggatttcgtggcccacccggccctcctggacctccagcaccggcagtg
gagggacataccacagtgcatgtggctggaccgccgggtgaaataggacctccaggagac
aaaggagaaaaaggcttttgcatcccacatcacgatggtgtcaaaggtgatcacggcccg
cctggaccaagaggtaaacctggcaaagatggagaggatgggccaaagggagaaaaaggc
tttcctggaaatcctggattcactggttctccgggttcaaagggagaaagaggaccacca
ggttttggtaatggtgcccccggtcctcccggtcctcgtggtctcccaggattaaatgga
gaaaaaggttttcctggtcctcagggagaggcgggtccaccaggccggcacattgaaggg
cctcgtggagagaggggtcagaagggagacatgggtgagaaaggagataggggtatggaa
ggagagtctctcattggacctccaggacaaccaggtctcagtggaccccctggaccacct
ggacaaccgattgaccctaatgaatgtaacattgctaaaggagctcctggtccacctgga
cctccagggttacgaggggaagtgggacagaaaggtgacacaggagatacctgtgttcag
tgtgaaagtttcggcccacctggattacctggcccccagggtcctaaaggagatcgagga
cctcctgggccagttggcagcaagggagacaagggtagatctggttctccaggagaacct
ggaagacatggttctcagggccctcccggactgataggcgctcctggtgctgttggtgag
ccaggggacgttttcgtagctcctggtctgaagggggacaaaggactgcctggtcagtct
ggttcaccgggacagccagggagagatggactgccagggagagatggcaccccaggtttt
cctggtcccaaaggagaacccgcaaaagagggcatcaagggtgagcgtggaccagctggg
gaccctggtcttattgggactccgggagagaggggtccacctggcgtgccaggcttcggt
cgaccaggagagtctggagagaagggcaaccctgggagacaaggctttcctggagctcct
ggagtacctggtataaaaggtgagccaggtacaggtgtgagcaccccaggacctcaggga
gtacctggaacacaaggagaacctggcagacctggagttaaaggtgacagaggcctgaca
ggtgatccagggttgccaggttttcctggactgaagggtgaacacggagctcctggaatt
ggatttccaggcccaactggtccgaaaggaatcagtggaattccaggagctcaaggatta
ccaggagagccaggaaaaccaggaaaggatggcttaactggacaacctggtgcacctgga
caaaagggagaaccaggacggggtctcccaggcccaaaaggttcgcagggccccccagga
attattggctttgccggagagaagggtaacattggactacctggtgttgctggacgagaa
ggccagacaggaccaccagggcctcagggagtcaaaggtgaggtgggacccccaggacct
cctggacaggttggcttaccaggtgccccaggaaaaggctcgcccggagctcctggacca
caaggaccacctggagagcctggaccgttcggtagggaaggtgttaagggagaaaagggc
tacccaggtcctcctggactggacatgcctgggcctcatggagagaagggagaccctggg
tttccaggagacccaggtcctaaaggactgccagggccacaaggcttaccaggcagggac
ggtctgtttggaactccaggtcccaaaggcgaaatgggggtcatagggacaccgggagta
ccgggatttcctggaccacctggtacacctggatctcctggtctgagaggtgatcccggt
attattggaccaaaaggtgatactggagaggctggatctaaaggagaaagaggagagcca
ggacttcagggacctcctgggaacatgagcgaagttgacatggagcatatgaaaggggag
aagggagaccgtggagatacaggtgagcctggggccactggacagaagggctaccgtgga
gttcctggagacgctggaatgccaggcaaagatggagatcctggatcacctggaaaacca
ggagagaaaggagaccctggttctcctggagagcctggcagcatgggaccacctggacag
aaaggcagtctaggagagatgggtataccaggtatatctggtccaaagggtactaaagga
gatattggtacaccgggacatccgggatttagaggcacagatggactaaagggagataag
ggtgcagctggagagcccggtattggactcccaggacttccaggagaaaagggtctgaca
gggcagccaggattcccaggtttacaaggagacaagggtgagaggggtcatgagggtatg
cctggcaagccaggaccacaagggtccaagggagaaaaaggaagcctcgggtatcaaggt
cagccaggtagaccaggtgagaagggtatccctgggctgccagggtctgcaggagaacct
ggtcgtgatggacggcctggtgaaggcggcttgcagggacctcctggtgttcctggagag
aagggagaccccggagtggacggaatccctggaacttctggggagagaggagacccaggt
ttacctggccgaggtttccccgggccacctggagtgcttggtagcaaaggtgacaaaggt
agtcccggtttccctggcactccaggccatccaggtgtccctggtatcaaaggtgacaag
ggacttgcaggctcagagggaccccagggtgagccaggagagaggggattcccaggtgcc
tctctcgagggccctaagggagataggggagaaacaggacaacccggagaaggaggttcc
ccaggagcaccaggaccctctggtgtgccaggcagagatggcctaaagggagagaaagga
gaccagggtaaccctggtttccagggagagacgggacataagggtgaccctggacttcct
ggacttcctggacaacctggccttccaggtatcgacggactgaagggagagatgggattg
cagggtgtccctggcttcccaggtgcaaagggtaatgtcggggacttgggattcaaaggt
gaatttggagacagagggttcccaggagaaaaaggcgctgaaggcccccctggtccccct
ggccaacacaccttcataaaaggagacattgggctccctggcattcaaggtttaccggga
ccacaggggccatctgggccatatggactgaaaggacagcaaggtgtgacaggtgttcca
gggccaaaaggtgaagatggccttcccggatatcatggtcagcctggagccaaaggagag
cctggcctgcctgggccacagggacccagaggacactctggccccccaggacccgatggt
gttccaggtcaagtgggtccacctggcccctcctccatggatcacgggttcctggtaacc
cgtcacagccaaacagtggagattccacaatgtcctgagggaacctcgctcatatatgat
ggctactccttgctctacgtacaaggcaacgaacgctctcatggacaggacttaggtacg
gccggcagctgtctaaggaagttcagccccatgcccttcctgttctgtaacatcaacaac
gtgtgtaactttgcctcccgtaatgactactcctactggctcacctcccctgagcccatg
cccatgagcatggcacctatcactggtgaaagcattaaaccattcattagcaggtgtgct
gtgtgtgaagccccagccatggtaatagcaattcacagtcagaccatcatgatcccacaa
tgccctcatgggtgggactctctatggattggctactcttttgtcatgcacaccagtgca
ggtgctgagggttcaggccaggctttggcctctcctggttcctgcctggaggaattccgc
agtgctccattcatcgagtgtcacggtcgtggaacctgcaattactacgccaactcctac
agcttttggcttgccaccattgaagacaatgagatgtttacgaagcctgtcccaacaacg
ctgaaagcaggcaatctccgaacacatataagccgctgtcaggtgtgcatgaagaggaca
taa
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