Micropterus salmoides (largemouth bass): 119905201
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Entry
119905201 CDS
T07309
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119905201 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119905201 (pan2)
Enzymes [BR:
msam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119905201 (pan2)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119905201 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
119905201 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Motif
Other DBs
NCBI-GeneID:
119905201
NCBI-ProteinID:
XP_038577906
LinkDB
All DBs
Position
Unknown
AA seq
1209 aa
AA seq
DB search
MMNFDGLDAGMGEYPPSLHGTMDAGMEPSMDPHLNPSMLQGVELDPEGLTVTVPEPVHLM
EGMFSELHSAVSEVGIPVTATHFDLQEEMLWMGNHRGHVTSFFGPTMGRYSSFQAHAADD
IRHIQSLETGVLFLSKCNLKCHTRGGLVMFDYPMDEGADMHSLLMTDNNTLLMGGLQNYA
VEFDLNTVQETQKFSVEVPGMAIMRQTSRFFFCGHTSGKVTLRDLRTFKTEQEFDAFSGS
LSDFDVHGNLLAACGFSSRGLNGLACDRFLMVYDLRMMRAVTPLQVHVDPLFLRFIPTYT
SRLAIISQTGQCQFCEPTGLANVADIFHVNTVGQLLMSFDVSSSKQALAFGDSGGCVHLW
SDAPEVSFNDYSRETDFALPCLVDTLPQLDWNHDLLPLSLIPMPLTSTEPLLSDWPTALA
TPSPRRAPPVDPEILRTMKTVGFIGYAANPRTRPRNQVPYKIKEVELDYDNYNQVPESPI
GRDEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVLY
FLEPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLI
LADSDEQTGKARLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSSLGSSGESAIGKL
FGCEVENSSLCRCGKETVRSSLTLLFTMHYPEQNSQEKTIKEYDFAEILKKSICLEQSTQ
AWCENCEKYQPTVQTRNIRCLPDVLVINCEVNSAKEAEFWKVQAEYAFNKAMQKEAMEPA
KPKEPPPMPTEWCLDGEECSMEGFTFDTRVEDLRHVWIPVSLKMSISKSQGLEISSWPEG
EELSAAEEAEGASLYDLVVTVPHILDARTGGNLVAHIKVGETYHQRKEGVTHQQWYLFND
FLIEPIDKTEAAQFDVSWKVPAILYYAKRNYHTKYDLRIKNPIDASVLLTEASLARKQRK
SHATFIPLMVSEMPQAGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRG
QGPNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDT
GVRFVGHGLQKDFRVINLLVLKDQVVDTVYLFHLPRKRMISLRFLAWYFLDLNIQGETHD
SIEDARTALQLYRKYLELSRGGGNDEVRKVLKGLYEKGRQLDWKVPESDTGDGQGSPKSA
AVFPSVMGL
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactttgacggtctcgacgctgggatgggtgagtacccacccagcctccacggg
actatggacgcggggatggagccctccatggacccccacctcaaccccagcatgctacag
ggtgtggagcttgatccagaggggctgaccgtgacagtccctgagcctgtacacctcatg
gaggggatgttttccgagctacacagtgcagtctcagaagttggcatcccagtcactgca
acacattttgatcttcaggaggagatgctctggatgggaaaccaccgaggtcatgtaact
tcgttcttcggacctacgatgggccgctattcttccttccaagcccatgcagctgacgac
atccgacacattcagagtttggaaacaggcgtcctgttcctttccaagtgtaatctcaaa
tgccacactcgtgggggccttgttatgtttgattacccgatggacgaaggagctgatatg
catagtcttctcatgaccgataacaacaccttgcttatgggcggattacaaaactatgcg
gttgaatttgacttgaatactgttcaagaaactcaaaagttcagtgttgaggtgcctgga
atggcaataatgcgccaaaccagtcgtttcttcttttgtgggcacacttctggcaaggta
accctgcgggacttgcgtacattcaagacggagcaggaatttgatgcgttctctggcagc
ctctcagactttgatgtccatggaaaccttctggctgcatgcgggttctcgagccggggt
ttgaacgggttggcatgcgatcgtttcctaatggtgtatgacctccgtatgatgcgagct
gtaacgccacttcaggtgcacgtggatcccctcttcttgcgcttcattcctacctacacg
tcacgccttgcgattatctcacagacaggtcagtgccagttctgtgagcccactggtctc
gctaatgtggcggacatttttcacgtcaacactgtgggccagttgctcatgagttttgac
gtatcatccagcaaacaagccttggccttcggagactccgggggatgtgtacacctgtgg
tctgatgctccggaggtatcatttaacgactactcccgggagacagactttgccctccct
tgccttgtggacacgctacctcagctggactggaaccacgacctgctgcctctctcgctt
atccccatgccgctgactagcacagagccactgctctcagactggcccactgcactggct
acacccagcccaagacgagcgcctcctgtggaccctgaaatcctgcgcacaatgaaaaca
gttggatttattggttatgcagcaaatcctcgaactcgccctcggaaccaggttccttac
aaaattaaagaagtggagctcgattatgataattacaaccaggtccccgaatcaccaatt
gggcgcgatgaagagccacacctgtacatggtccccaaaaagtacagaaaggtcacaatt
aaatactctaaacttggactggaggactttgacttcaaacattacaatagaaccttgttt
gctggccttgagcctcacatacccaatgcctactgtaactgcatgatccaggttttatat
ttcctggagcctatccggtgtctagtgcagaatcatttgtgccagaaggagttttgtttg
gcctgtgagctcggtttcctcttccacatgcttgatttgtcacgaggagatccatgtcag
gccagtaacttcctccgagcgtttcgtaccattcctgaggcctcagctctgggtctgatc
ctcgcagactcagatgagcaaacagggaaggccagactcgggcgtttaatccaaagctgg
aaccgcttcatcctcacccagctccaccaggagacacaggagcaggagggcccacaggcc
tacaggggagccagcagcagttcgctgggttcctctggtgagtctgccatcggaaaactc
tttggatgtgaagttgagaacagcagcctgtgtcgctgtggcaaggagacggtccgctcc
tccctcacgttgctcttcaccatgcattaccctgagcagaactctcaagagaaaacaata
aaggaatatgattttgctgagatcttgaagaagagcatctgtctggagcagagcactcag
gcgtggtgtgaaaactgtgagaagtatcaacccacagtgcagacacgcaacattcgatgt
cttccagatgttctggtcatcaactgtgaggtgaacagtgctaaagaggctgaattctgg
aaggttcaggcagagtacgccttcaataaagccatgcagaaagaggcgatggaacctgca
aaacctaaagaacccccacccatgccaactgagtggtgtttggacggggaggagtgcagc
atggagggctttacctttgacacacgggtggaggatctgcgacacgtctggatccctgtc
agtctcaagatgtccatcagcaaaagtcagggactagagatcagcagctggcctgaagga
gaggagttaagtgctgccgaagaggcggagggcgcttcactctatgatttggtggtcacg
gtgcctcatatcctagacgctcgcacaggtggaaacttggttgcacacatcaaagtaggg
gaaacctatcatcaaagaaaagagggagtcacgcaccagcagtggtacctcttcaatgat
ttcttgattgagccaattgacaagactgaagctgctcagtttgatgtgagctggaaagtg
ccagccattctgtactacgccaagaggaactaccataccaaatatgaccttcgcattaaa
aatcccatagatgccagtgtgctgctgacagaggcctctttggctcggaagcagaggaag
agccatgcaacttttattcccctcatggtcagtgagatgccgcaggctggtgacttggtg
ggactggacgctgagtttgtcacactcaaccaggaagaggcagaacttcgcagtgacggc
accaaatcgaccatcaagcccagtcagatgtctgtggccaggatcacttgtgtgaggggt
caggggcccaacgagggggtgcccttcattgatgactacatctctactcaggagcaggtc
gtcgactatttgacacaatattctggcatcaaaccgggggacttggatgcaaagatttct
tctaagcatttgaccacactgaagtccacttacttgaagctgcgcttccttatcgacaca
ggagttcgcttcgttggccacggtttacagaaggactttcgggttattaatttattggtt
ctgaaagaccaagtcgttgacactgtttacctgttccatttaccccgcaagaggatgatt
tctctgagatttctcgcctggtactttctggacctcaacatccagggggaaacccacgac
agcatagaggacgcccgcactgctctgcagctgtacagaaagtacctggagctgagtcgc
ggaggcgggaacgacgaagtcaggaaggtcctgaagggactctatgaaaaaggccgccag
ctggactggaaagtcccagagtctgacacaggagatggtcaaggtagcccaaaaagtgct
gctgtgtttccctctgtgatggggctgtga
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integrated database retrieval system
