KEGG   Micropterus salmoides (largemouth bass): 119905207
Entry
119905207         CDS       T07309                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
msam  Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:msam00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:msam01009]
    119905207 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:msam03036]
    119905207 (kdm5bb)
Enzymes [BR:msam01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     119905207 (kdm5bb)
Protein phosphatases and associated proteins [BR:msam01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     119905207 (kdm5bb)
Chromosome and associated proteins [BR:msam03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    119905207 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID PHD zf-C5HC2 JmjN PHDvar_NSD PHD-1st_NSD
Other DBs
NCBI-GeneID: 119905207
NCBI-ProteinID: XP_038577913
LinkDB
Position
Unknown
AA seq 1561 aa
MSLPRPDEFKPPPECPVFEPSWEEFRDPFAFINKIRPIAEKTGICKVRPPPGWQPPFACD
VDRLHFVPRIQRLNELEAQTRVKLNFLDQIAKFWDLQGCVLKIPHVERKILDLYKLNKLV
ADEGGFDIVCRDRRWTKIALQMGFAPGKAVGSHLRGHYEKILYPYNLFQSGANLLAPELA
SKLMRLEADPELEKCVQKPVQSVESPGSTDIKEHKLQDQAQRQPPQTPDTCPTARRAKRM
KCEATCVKTEPSEPSESKPNLRRRMGSLVAKQEPEKEIPIPVKQEPVESKEPIIEADKSK
SRYKKFIPPVPASPQQGKTAPGISTNTFKYKVDLVVCLVCGSGGEEDRLLLCDGCDDSYH
TFCLIPPLHDVPRGDWRCPKCLAQECSKPHEAFGFEQAYRDYSLRAFGQMADAFKSDYFN
MPVHMVPTELVEKEFWRLVGAIDEDVTVEYGADIASKEFGSGFPIPNGKFKVSPADEKYL
KCGWNLNNLAMMNPSVLTHVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGE
PKTWYGAPGFAAEQLEEVMRKLAPELFESQPDLLHQLVTIMNPNTLMAHGVPIYRTNQCA
GEFVITFPRSYHSGFNQGFNFAEAVNFCTVDWIPLGRQCVEHYRSLHRYNVFSHDEMVCI
MASKADTLDVVLASAVHKDMVAMIQEEQELRDKVKKMGVLHCKEAQYDNLQDDERQCAKC
RTTCYLSAITCPCSPGVLVCLYHINDLCSCPFTNYTLNYRYTLDDLFPMMNAVKQRAELY
DNWASLVTETLEAKLEKKKGLPVFRSLLAESESKLFPDNDLLRRLRLVTQDAEKCATVAQ
QLLNGKRQTRYRCGNGKSCSQLTVEELRSFVRQLYNLSCSLPQAPKLKELLNRIEDFQQH
SEKVLADEVPSVAEIQSLLDVSFDFDVELPELPCLRGRLEQARWLEGVQQASAQPATLTL
ETMRRLIDQGVGLSPHPSVEKAMARLQELLTVSEHWEDKASSLLKARPPHSIETLSAAAE
KTSGIPAYLPNCLLLKDTIRKAREWLQEAEELQASGGLPMMNSLSDMVLRGQAIQVHLEP
LDRLESLMVEVQEWKESAATTFLHRDSTHTLLEVLCPRCEVGNVGSPKRKPKKGKESPKS
NKKKTPRLNTLSEVEKALSETKDSTSAMATLEELRVREMEAFSNLRAANESKLLPTADCM
DLKVCVCQMAPMGAMLQCELCRDAFHSVCVRDASDSCETQPWLCPQCQRSERPPLNKVLS
LLASLRHTGVRLPEGDALHYLVERTVDWQQRAQQISQSCNLPELEERPGTPPTLTRWASS
SHDAHNNTQAPCLTPEWNRTSHTQTVFYTEQRCIPLQGLSRDLEELMVEGLLLQVSLPEI
QSLYHVLLDRANSQHTNRCMSPPQDKSADCDTHMQFNSQGKSQPLDQDDANDVRETMSGS
EKKAKRHLEREGVVAEGRGKPRKHSHKRQKMNKKNLQRRPASTSSSPRSDFSQSDDSDEE
MAVCPAERCQLPEGDEVHWVQCDGSCNQWFHQVCVGVTAEMAEKEDYICVRCTLNDGHMR
K
NT seq 4686 nt   +upstreamnt  +downstreamnt
atgagcctgcctcggccggacgagttcaagcctcctccggagtgcccggtcttcgagccc
agctgggaagaatttagagatccgtttgccttcatcaataagatccgtcccatcgccgaa
aaaactggcatttgcaaagtccgaccgcctccgggttggcagcctccgttcgcttgcgat
gttgacagacttcactttgttcctcggatccagaggctcaatgaactggaggcacagacc
agagtaaagctcaacttcttggaccagattgccaaattttgggatttgcagggatgtgtg
ctgaagattcctcatgtagagaggaagattttggatttatataagcttaataagctggta
gcagacgagggtggatttgacattgtctgtcgggacaggagatggaccaagattgcacta
caaatgggctttgcccctggtaaagctgttggctcacacctgcgagggcattatgagaaa
attctctatccctacaacctgtttcagagtggagcaaacctcctggcaccagagctagct
tccaaactgatgcgtttggaggctgatcccgaacttgaaaagtgtgttcagaagccagtc
cagtcagttgagagtccaggaagcacggacattaaggagcacaagctgcaggaccaggct
cagaggcagcctccccagacgccagacacttgccccactgctcgcagagccaagcgtatg
aagtgtgaggcaacctgtgttaagactgaaccaagtgagcccagcgagagcaagccgaac
ctgaggcggaggatgggttctttagtcgccaagcaagaaccagaaaaagagattcccatt
ccagtgaaacaggaaccagttgaaagtaaggaaccaataattgaagctgataaatccaag
tcacggtacaagaaattcatccctcctgttcccgcgagtccacaacaaggaaaaacggct
ccagggatttctacaaatacgttcaaatacaaggtggatctggttgtgtgtctggtgtgt
ggcagtgggggagaagaagaccgtctgttgctgtgtgacggctgtgacgacagctaccac
accttctgcctgatccctcctctgcacgacgtccccagaggagactggaggtgccccaag
tgtctggctcaggaatgcagcaaacctcatgaggcgttcggctttgaacaagcatacaga
gactattccctgcgtgcatttgggcaaatggctgatgcgttcaaatcagattatttcaac
atgccagttcatatggtacccacagagctggtggagaaagagttctggcgtttggtggga
gccattgacgaggatgttaccgtagaatatggagcagatattgcctcaaaggagtttggg
agcggattccccattccgaatggaaaatttaaggtttccccagctgatgagaaatacctc
aagtgtggctggaacctgaacaacctggcgatgatgaacccttctgtactgactcatgtg
acagctgacatctgtggcatgacactgccttggctttatgttggcatgtgcttctcctcc
ttctgctggcacattgaggatcactggagctactctatcaactacctgcactggggggaa
cccaaaacctggtacggagcccctggttttgctgcagaacagctggaggaagtgatgagg
aaactggccccggagctgtttgagtctcagcctgacctgctgcaccagctggtcactatc
atgaaccctaacaccctaatggcccacggagtcccaatttacagaacaaaccagtgtgct
ggtgagtttgtcatcactttccctagatcctaccacagcggattcaatcagggcttcaac
ttcgctgaggcagtcaacttctgcactgtggactggatacctctcggcaggcaatgcgtt
gaacactatcgttcgctgcatcggtacaatgtgttctcccacgatgagatggtgtgcatc
atggcctcgaaagcagacacactcgatgtggtcctggcatccgctgtccataaggacatg
gttgccatgatccaagaagagcaggaactgagggataaagtgaagaaaatgggtgtgtta
cattgcaaggaagcacaatacgataacctccaggatgatgagcggcagtgtgccaagtgc
aggaccacctgctacctgtctgccatcacctgtccctgtagcccaggagtacttgtttgt
ctgtaccacatcaacgacctgtgctcctgccccttcaccaactacacactgaattacaga
tacacactggacgacctgttccccatgatgaatgctgtgaagcagcgagctgaactgtat
gataattgggcctctcttgtgacagaaactctagaggctaaactggaaaaaaagaaaggc
ctgccagtgtttcgctcccttcttgcggaatcagagtccaagctgttccccgacaatgac
ctgctgcgtcggctacgtctggtcacacaagatgcagagaagtgtgccacagtggcacag
cagctattaaatggcaagaggcagaccaggtatcgatgtggtaatgggaaatcatgcagc
cagctaactgtggaggagctgcgttcatttgtgaggcagctgtataacctctcctgcagt
ctcccccaagcccccaagttgaaggaactcttgaaccgcatcgaagacttccagcagcac
agtgagaaggtcttggcagatgaagttcccagcgtcgccgagatccagagcctgttagat
gtcagctttgactttgacgtggagctgcctgagctgccctgcctgagagggaggctggaa
caggcacgctggctcgagggggtgcagcaggccagcgctcagccagccaccctgactctg
gagaccatgaggagactcatcgaccagggagtcggcctgtcgcctcatccgtccgtggag
aaagccatggcccgcctgcaggagcttctcactgtgtccgagcactgggaggacaaggcg
agcagtctcctgaaagccagaccaccacactccatagagactcttagtgctgctgctgaa
aagacatctggcatccccgcttacctcccaaactgtctcctcctgaaagataccatcaga
aaagccagagagtggcttcaagaagccgaggagcttcaggccagtggtggcttaccgatg
atgaacagcctctctgacatggtgcttagaggacaagccattcaagtccacctggagcct
ttagacaggctggagtctttaatggtagaagtgcaagaatggaaagaatctgcagctaca
accttccttcacagagactcgacccataccttactggaggtcctgtgtccaagatgtgaa
gttggaaatgtaggttctccaaagaggaagcccaagaaagggaaagaatcgcctaaaagt
aacaaaaagaaaacaccaaggctcaacactctcagtgaagtggaaaaagcgctttcagag
accaaggattctacctctgccatggcaactctggaggagctgcgggtgagggagatggag
gctttctctaatctcagggcagcaaatgagtcaaagctccttcccacagcagactgcatg
gacttgaaggtgtgtgtctgtcagatggcgcccatgggtgcgatgctacagtgtgaactc
tgcagggatgccttccatagcgtgtgtgtcagagacgcgtcagactcctgcgaaacacag
ccgtggctctgtccacagtgccagcgatcagaaaggccccccttaaacaaagtcctctca
ctgctggcatcgctgcggcacacaggggtgcgcctgccagagggcgatgcactgcactat
ctggttgagaggacagttgactggcagcagagagcacagcagatttcacagtcttgtaac
ttgccagaactggaagagagaccaggaactccccccaccttaacccgctgggcatcaagc
agccacgacgctcacaacaacactcaggctccttgtttgactccagagtggaataggaca
agccatactcagacagtattctacaccgagcagagatgcatcccgctgcagggcttgagt
cgggatctggaggagctcatggtggaggggctccttctgcaggtgtctctgccagagatt
cagagcctttaccatgttttattagacagagccaacagccagcacacaaacagatgcatg
tcgccaccacaggacaaatccgctgactgtgacacacacatgcagtttaactctcaggga
aaaagtcagccactggaccaggatgacgccaatgatgtgagggaaactatgagtggctca
gaaaagaaagcaaagcgacatctggagagggaaggtgtcgtcgcagagggcagggggaag
cccagaaaacactctcacaaaagacaaaagatgaataaaaagaacctgcagcgcagacca
gcctcgacctcgtcatctccacgctctgatttctcccagtctgacgactcagatgaggaa
atggctgtgtgtccggcagagaggtgtcagctgccagagggagatgaggtgcattgggtc
cagtgtgacggcagctgtaaccagtggttccaccaggtctgcgtcggtgttacagccgag
atggcagagaaggaggactacatttgtgtcaggtgtacactgaacgatggacacatgaga
aaatga

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