Micropterus salmoides (largemouth bass): 119905271
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Entry
119905271 CDS
T07309
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04510
Focal adhesion
msam04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119905271 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119905271 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
msam00536
]
119905271 (col2a1a)
Glycosaminoglycan binding proteins [BR:
msam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119905271 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
119905271
NCBI-ProteinID:
XP_038578052
LinkDB
All DBs
Position
Unknown
AA seq
1484 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSIVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DTGAVLCDEIICEEIKECANPIIPSGECCPICPADASAPIETIGAKGQKGEPGDIADVVG
PKGPPGPMGPPGEQGPRGETGAKGDKGNIGPRGRDGEPGIPGNPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGEAGEPGPAGAMG
PRGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHSGLDGAKG
ETGAAGAKGESGAAGENGAPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGSKGEAGPTGARGGEGPQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKG
SAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPVGPQG
APGPSGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGESGKPGEKGLVGRPGLRGLPGKDGETGASGPSGPAGPAGERGEQGQPG
PSGFQGLPGPSGPPGEAGKPGDQGVSGEAGAPGAVGPRGERGFPGERGGAGPQGLQGPRG
LPGTPGSDGPKGAIGPAGAVGSQGPPGLQGMPGERGAGGIPGPKGDRGDNGQKGPEGAPG
KDGARGLTGPIGPPGPSGPNGAKGETGPTGPTGVSGARGAPGDRGEVGPPGPAGFAGPPG
ADGQPGAKGELGETGQKGEGGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGSPGPNGNPGPVGPSGPAGKDGPKGARGDAGPPGRQGDTGLRGPPGQQGEKGEAG
EDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSSGDRGPPG
PVGPPGLTGPAGEPGREGTPGSDGPPGRDGAVGVKGERGNTGPIGAPGAPGAPGAPGPVG
PLGKQGDRGESGAQGPAGPAGSAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQG
LPGPPGPAGDAGAAGPAGPTGAKGPAGPAGPAGKDGSNGQPGPIGPPGPRGRSGESGPAG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSTDPLRYMRADEASSSLRQHDVEVDSTLK
SLNSQIENLLNPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAMKVFCNMETG
ETCVYPSIAKVPQKNWWTSQSKAHKHIWFGETMNGGFHFSYAQDGPAASVQLTFLRLLST
EASQNLTYHCKNSVAYMDLATGNLKKALLLQGSNDVEIRAEGNSRFTYSVVEDGCKSHTG
QWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccatcgtcagatgtcaggaagaggacgaccaggaggcaggtggctgcatccaggac
ggccagcagtataatgataaggatgtgtggaagcccgagccgtgtcgcatctgtgtgtgc
gacaccggagcggttctgtgtgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagacgattggcgctaagggccagaaaggtgaaccaggagatattgcagatgttgtagga
ccaaaaggaccaccaggccctatgggccccccaggtgagcaaggaccacgcggagaaact
ggcgccaagggtgataagggaaatatcggacctcgaggaagagatggtgagcctggcatc
cctggaaaccctggaccccctggcccacctggaccaccagggctcggagggaactttgct
gctcagatggctggaggtttcgatgagaaggctggaggcgctcagatgggtgtgatgcaa
ggaccaatgggtcctatgggtcctcgtggtccccccggacctagtggagctcctgggcca
cagggtttccaaggtgcccctggagaggctggagagcctggtccagctggagcaatggga
cctcgtggaccacctggaccttctggaaaacctggaagcgatggtgaggctggcaaacct
ggaaaagctggtgagcgtggacctgcagggcctcagggagctcgtggattccctggaact
cctggacttcctggaatcaaaggacacagaggccattctggtctggatggagcaaaggga
gaaactggagctgcaggagccaagggagagtctggtgctgccggagagaatggtgcccct
ggtcccatgggcccgcgtggtctgcctggtgagaggggacgtcctggagctgctggagct
gcaggtgcccgtggaaatgatggcttgcccggtcctgccggcccacctgggcctgttggt
cctgctggagctcccggtttccccggatctccaggatccaagggagaagctggtcctact
ggagcccgtggaggtgaaggaccacagggaccccgtggagaggctggtactccaggatct
cctggacccgccggagcatcgggtaaccccggtactgatggtattccaggagctaaagga
tctgctggtgcttctggtattgctggtgctcctggattccccggcccccgtggcccacct
ggaccacagggagctacaggacctcttgggccaaagggacagtctggagaccctggtctt
cctggattcaaaggtgaagctggacccaagggagaacttggccctgttggtccccaaggt
gcccctggtccatctggtgaagaaggaaagagaggtgccagaggagagcctggagctgct
ggaccactcggacctccaggagagagaggagctcctggtaaccgtggtttcccaggtcag
gatggtcttgctggtgctaagggtgcccctggtgaccgtggtgttcctggtgctgctggg
cctaaaggtgctactggagaccctggacgcacaggagagtctggcctccccggagctaga
ggtcttactggtcgtcctggagatgctggtcctcaaggcaaagttggaccctctggtgcc
cctggcgaggacggtcgccccggcccacctggccctcagggagcccgtggacagccagga
gtgatgggattccctggaccaaagggagccaatggtgaatctggaaagccaggagagaag
ggtcttgtgggtcgtcctggtctgagaggtctgcctggtaaagatggtgagactggtgct
tctggaccttcaggccctgctggacctgctggagagagaggagagcaaggacagcctgga
ccttctggtttccagggtctgcctggaccatctggccccccaggagaggctggaaaacct
ggagatcagggtgtttctggagaggccggagctcctggtgctgttggacctagaggtgaa
cgtggtttccctggtgagagaggtggtgctggacctcagggtctccagggacctcgtgga
cttcctggaacacctggaagtgatggacccaagggagccattggaccggctggtgctgtt
ggatcccagggaccccccggtctgcagggtatgcccggagagagaggagctggtggcatc
ccaggacccaagggagacagaggtgataacggacagaaaggacctgaaggagctcctgga
aaggatggtgctagaggtctgactggtcccattggtcctcctggcccatcaggacccaac
ggagccaagggagagactggacccactggccctactggtgtttctggtgctcgtggtgct
cctggtgaccgtggtgaggttggtccccctgggcctgctggctttgctggacctcctggt
gcagatggtcagccaggtgccaagggagagcttggtgagactggacagaagggagaagga
ggttcccctggacctcagggaccatcaggagctcctggacctgtgggacctactggtgta
tcaggaccaaaaggagcacgaggtgctcagggagctcctggtgcaactggtttccctggt
gctgctggcagagtaggatctcctggtcctaatggtaaccccggccctgttggcccttct
ggccctgctggcaaagatggaccaaagggtgctcgtggtgatgctggacccccaggaaga
cagggagacactgggcttcgtggacctcctggccaacaaggagagaagggagaggctgga
gaggatggaccacctggtgctgatgggccttcaggtcctcagggtctggctggatctcgt
ggtattgttggtttgcctggtcagcgtggagagagaggcttccctggtctccctggacct
tctggagaacctggtaaacaaggagcttctggttcctctggggaccgtggacctcctgga
cctgtgggaccccctggacttactggacctgctggagagcctggaagagagggtacccct
ggatcagatggacctcctggtagagatggagctgttggagtcaagggagagcgaggtaac
accggtccaattggtgcccctggagctcctggtgcccctggtgcccccggacctgtcgga
ccgctcggcaagcagggagacagaggagagagtggtgctcaaggacctgcaggacctgct
ggatctgctggcgctagaggaatggctggaccccaaggaccacgtggagacaagggtgag
gctggtgagactggagagaggggacagaagggtcaccgtggcttcactggtctgcagggt
cttcctggacctcctggtcccgctggagatgctggagccgccggacctgcaggaccaacc
ggagctaagggaccagctggaccagctggacctgctggcaaagatggatcaaacggtcag
cccggccccattggaccccccggaccacgtggacgctctggagaaagcggtcctgctggt
cctcctggtaatgccggaccccctggccctcctggtcctcctggccctggcatcgacatg
tctgccttcgctggtctgggtcagactgagaagtccactgatcctctcaggtacatgcgg
gctgatgaggcctccagctccctgaggcagcacgacgtggaggttgactctacactcaag
tcccttaatagccagattgagaacctgctcaaccctgacggctcccagaagaaccctgct
cgcacctgcagagacctgaaactgtgccaccctgagtggaagagcggtgactactgggtt
gatcccaacattggcagcacagccgatgccatgaaggtcttctgtaacatggagactgga
gagacctgcgtctacccaagcatcgccaaggtaccacagaagaactggtggaccagccag
agcaaggcccacaaacacatctggttcggagagaccatgaatggaggattccacttcagc
tacgctcaggacggccctgctgccagtgtccagctgactttcttgaggcttctgtccact
gaagcatcccagaacctcacgtaccactgcaagaacagcgttgcctacatggacctggcc
acaggcaacctgaagaaggctctgctgctgcagggctccaacgatgtggagatccgcgca
gagggcaacagtcgcttcacatacagcgtggtggaggatggctgcaagagccatacaggc
cagtggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctgccaatcgtg
gacattgcccctatggacatcggaggagcggatcaggagtttggcgtggatgtaggcgca
gtctgcttcttgtaa
DBGET
integrated database retrieval system
