Micropterus salmoides (largemouth bass): 119905398
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Entry
119905398 CDS
T07309
Name
(RefSeq) embryonic polyadenylate-binding protein A-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03015
mRNA surveillance pathway
msam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119905398
09123 Folding, sorting and degradation
03018 RNA degradation
119905398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119905398
03041 Spliceosome [BR:
msam03041
]
119905398
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119905398
mRNA cycle factors
Stress granule specific factors
119905398
Spliceosome [BR:
msam03041
]
Complex C
Other components
Complex C specific factors
119905398
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RBD_RDR6
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
119905398
NCBI-ProteinID:
XP_038578339
LinkDB
All DBs
Position
Unknown
AA seq
682 aa
AA seq
DB search
MNSSGQAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDERGSKGYGFVHFETHEAANRAIDTMNGMLLNDRKVGGTGNQLEPGFV
NPKAHFLGGKCQLSLISFVGHFKSRKEREVEFGTKAMKFTNVYIKNFGEDYTDEKLKEVF
SVFGRTLSVRVMKDERGRSRGFGFVNYANHEDAQKAVDEMNGKDINGKIIYVGRAQKRLE
RQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKIGRHFSI
LMAHKVKSPSAFCLQAFRFQVMTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY
VALAQRREERKAILTNKYMQRLATLRSMTSPIIDSYQQAGYYMTVPQPPTRSFYNHNAVS
NMRPVPRWTGQPPRLQGPYTTQFVGSSVPRRGTNPIATVRQASTQAPRIISSTQKTNNIG
TQTVGGRTDMPGGTRSSQYKYASAVRNVQQVITIPAPMTRVQVVPAPMMEQLVHIQAQEP
LTASMLAAAPLMDQKQLLGERLYPLIHALHPNLAGKITGMLLEIDNTELLHMLDSPESLQ
SKVDEAIAVLQAHQVKECSPKK
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggacaagcatatcccctcgcttctctgtatgtgggggacctgcatcct
gatgttacagaggccatgctctaccagaaattttctcctgctggacccatcatgtcaatc
cgtgtgtgccgcgacatcatcacacgcagatctctgggatatgcctacattaacttccag
caaccagctgatgcggagtgcgccctggatacaatgaactacgacgttatcaaggggcgg
cctatccgaataatgtggtctcagcgtgacccgggactcaggaagtctggtgtgggaaac
atcttcatcaagaacatggatgaatctattgacaacaaggcactgtatgacaccttctca
gcctttggcaatatcttgtcctgcaaggttgtttgtgatgagagaggatccaaaggctat
ggctttgttcactttgagactcatgaggctgcaaaccgggccattgacaccatgaacggg
atgctgctgaatgataggaaagttggagggacaggtaatcagttggaacctggctttgtc
aacccaaaggcccatttcctggggggaaaatgtcagttgtcccttattagttttgttggc
cactttaaatcccgcaaggaaagagaggtggagtttggcaccaaagctatgaagtttacc
aatgtctacatcaaaaactttggtgaagactacactgatgagaaactcaaggaagtcttt
tctgtatttgggaggactctcagtgtgcgagtgatgaaggacgagaggggtcgttcacga
ggatttggctttgtaaactatgctaaccacgaggatgctcagaaggcagttgatgaaatg
aatggaaaggatatcaatgggaaaatcatctatgtaggccgggctcagaagcgtctggag
cgccagggagagctcaagcgcaagtttgaccagatcaaacaggaccgcatccaacgctat
cagggggtgaatctgtatgtgaagaacttggacgatagcatagatgacgagagactccgg
aaggagtttgccccttatggcaccatcacaagtgccaagattggcagacatttttcaata
cttatggctcacaaagtcaagtccccttcagctttttgtcttcaggcattcaggtttcaa
gtcatgacagatggctcccaaagcaagggctttggctttgtctgtttctcttcacccgag
gaagcaacaaaagcagtaactgaaatgaacgggagaattgttgcaaccaagccactgtat
gtggctctggctcagcgaagggaggagcgtaaagccatcctgaccaataaatacatgcag
agacttgctaccttgaggagcatgacaagtccgatcattgactcctaccagcaggctgga
tactacatgactgtaccacagcctcccactcgctccttctacaaccacaatgctgtcagc
aacatgagaccagtccctcgttggacaggacaaccaccgagactacagggcccctacaca
acccagttcgttggtagttctgttcctcgacgtggaacgaaccctatcgctacagtcaga
caggcttccacccaggctccacgcatcataagctccacacaaaagacaaataacatcggg
acccagactgtaggagggcgtactgacatgcctggtgggaccagaagcagccagtacaag
tacgcgtctgcagtaagaaacgtccagcaggtcattactatacctgcacccatgacaaga
gtgcaggttgttcctgcacctatgatggagcagctggtgcacattcaagcccaagagccg
ctcactgcctcaatgttggctgcagctcctctcatggatcagaaacagcttcttggggag
cgattgtacccactgatccatgcccttcacccaaacttggctggaaaaatcactgggatg
ctgctggagatagacaacacggagctgctgcacatgctggactcgcccgagtcccttcag
tctaaggtggatgaggcgatcgctgtcctgcaggctcaccaggtgaaggaatgctctcct
aaaaagtga
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