Micropterus salmoides (largemouth bass): 119905517
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Entry
119905517 CDS
T07309
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
msam01009
]
119905517 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119905517 (hdac6)
04131 Membrane trafficking [BR:
msam04131
]
119905517 (hdac6)
03036 Chromosome and associated proteins [BR:
msam03036
]
119905517 (hdac6)
Enzymes [BR:
msam01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
119905517 (hdac6)
Protein phosphatases and associated proteins [BR:
msam01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119905517 (hdac6)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
119905517 (hdac6)
Membrane trafficking [BR:
msam04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
119905517 (hdac6)
Chromosome and associated proteins [BR:
msam03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
119905517 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
119905517
NCBI-ProteinID:
XP_038578558
LinkDB
All DBs
Position
Unknown
AA seq
1096 aa
AA seq
DB search
MQSGSDPPGSGPKSVRRSPRLSPQCSGSSKGKEERKGGSSLQEVKRRGRMERSGEEEEEL
SSSLQTMDLSCRSAATGTGLVYSEIFTRHKNLWESSHPESPERVASIMEELERQELLSHC
VRVEPREATEEELLLAHMKHYVDLMKSTQTMTENELKTLSEKYDSVYFHPESFQVCVSAV
GSVLQLVDRVMTSELRNGFAVIRPPGHHAQSNESNGFCIFNNVAIAARYARTRHSASRVL
IVDWDVHHGQGIQYLFQEDPSVLYFSVHRYESGSFWPHLPESDSHFVGSGRGEGRTINLP
WNKTGMTDADYIAAFQQLLLPVAHEFQPQLVLVSAGFDAAVGDQKGEMCVSPQCFHVLTH
MLMSLAEGRLVLALEGGYNLQATAEGVAACVRALLGGACPPLTPPTAPSDSALQSISQTL
SALYPHWASLQILEGFPLAGGSVIRATTNERSPSTSVATTTGLVYDERMMEHLNLWDRHH
PEQPQRIFKIFSKHQQLGLVDRCQRIPARLATEEELSRCHRVQHINQMKATAEMKPRDLH
ILANNFNSIFLNNQSFQSAQLAAGGCFNAVERILTGQVSNGVAIVRPPGHHAEADSPCGF
CLFNTAALAARHAQQITQDAPLRVLILDWDVHHGNGTQHMFEDDDSVLYISLHRYDNGMF
FPSSEDAAPNRVGVSKGAGFNVNVAWSGGRMGDSDYLAAFHRVVMPIATEFNPGLVLVSA
GFDAARGDPLGGYHVTPEGYAHLTHLLMSLAGGRVLLILEGGYNLSSISDSMAMCTSVLL
GDPPPSLVTPLPPPHHSAVATINEVIRHHAPYWRSLRIHIPESVRASVPALKHRGKRSSK
GKGRKSEQSSTEKPPLPPTGPEDKTTERGLEQLTQGLAGLDISQTSGGHTPATSTAVGGA
RPKVRLSPEKVTCEGEVKAESEEVTPEQSQSAESTLPQPQAVAASESVAPSGGAGAEPEA
EGACGWSKPLTSLELKCGGQTDTPLYVVDPLPWCPHLDAVKPLPPSGIDVFLPCQDCGSD
AENWTCLTCYQVFCGRYVNEHMVTHGVVSEHPMVLSFSDLSVWCYLCESYVHNQTLFEAK
NAAHWAKFGEEIPPWS
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgcagtctggatcggatcctccaggatctggaccgaagtccgtcaggagatctcctcgt
ctttctcctcagtgcagcggcagcagcaaaggaaaggaggagaggaaaggaggaagcagt
ctgcaggaggtgaagaggagaggaaggatggagaggagcggcgaggaagaggaggagctg
agcagcagtctgcagacgatggatctgtcctgcaggtctgcagccacgggaacgggtctg
gtttactccgagatcttcactcgtcataagaacctgtgggagtccagtcacccggagagt
ccagagcgagtggcgtccatcatggaggagctggagcgccaggagctgctgtctcactgc
gtcagggtggagcccagagaagctacagaggaagagctgctgctcgctcacatgaaacat
tatgtggatctgatgaagtcgactcagacgatgacggagaatgaactaaagactctgtct
gagaaatacgactctgtttacttccatcctgagtccttccaggtgtgtgtgtcggcggtg
ggttcggtcctgcagctggtcgatcgggtcatgacctctgaactcaggaacggattcgct
gtcatcaggcctccaggtcatcacgctcagtcgaacgagtcgaacggtttctgtattttc
aacaacgtggcgatcgcagctcgttacgctcggaccagacactcagccagcagggtgctg
atcgtggactgggacgttcatcacggtcaggggatccagtacctgttccaggaggacccc
agcgtcctgtacttcagcgtccacaggtacgagagcgggtccttctggccccacctccca
gagtctgacagtcattttgtcggcagcggacgaggtgaaggccgaaccatcaacctgccc
tggaacaagacggggatgacagacgctgattacatcgctgctttccaacaactgctgctg
cctgtagcccacgagtttcagcctcagctggtcctggtctccgctgggtttgatgctgcg
gtcggagatcagaagggggagatgtgtgtgagtcctcagtgtttccacgtcctgacccac
atgctgatgagtttggcagaaggtcgactcgtcctcgccctcgagggaggttataacctg
caggcgacagcagagggcgttgcagcctgtgtcagagctctcctgggtggagcctgcccg
cctctgactccgcccaccgccccgtctgacagcgctctgcagtccatctctcagacgctg
tcggctctgtatccacactgggcctctctgcagatactggaaggcttcccattggccggc
ggaagtgtaatcagagcgacaaccaacgagcggagcccttccacctctgttgccacgaca
acaggtctggtttatgatgagaggatgatggagcacctgaacctgtgggacagacatcac
cccgagcagcctcagaggatctttaaaatcttctccaaacatcagcagctgggattggtc
gatcgttgccaacggatacctgctcgcttagcgacagaggaggagctgtccaggtgtcac
agggtgcagcacattaaccagatgaaggccacagcagagatgaagcccagagatctgcac
atactggcaaacaacttcaactccatcttcctcaacaaccagagcttccagtccgctcag
ctggctgcaggaggctgcttcaacgctgtggagaggatcctgacaggacaggtgagtaac
ggcgtggcgatcgttcgtcctcctggtcatcacgctgaggcagattctccctgtggtttc
tgtttattcaacacggcagcgctcgccgctcgccacgcccagcaaattacccaagatgca
ccgctgcgagtcctcatcctggactgggatgttcaccacggcaacgggacgcagcacatg
ttcgaagacgacgacagcgtactgtacatctccctccatcgctacgacaacgggatgttt
ttcccgtcttcagaggacgccgcccccaacagggtgggcgtgtcaaagggggctgggttt
aacgtcaacgtagcgtggagcggcgggcggatgggcgactccgactaccttgccgccttt
caccgtgttgtcatgccgatcgccaccgagtttaaccccggtctggttctggtgtcggct
gggttcgatgcggctcggggggatccgctgggtggatatcatgtgaccccggagggatac
gcccacctcacacacctgctgatgtcactggccggagggcgggtcctgctcatactagag
ggaggttataacttatcgtcgatctctgactccatggcgatgtgcaccagcgtgttgcta
ggagaccctcctccctctttggttacgcccctcccccctcctcatcacagcgccgtggca
acgatcaacgaggtcatccgacaccacgccccctactggcggtccctgaggatccacatc
ccagagtctgtccgggcgtccgtgcccgccctgaagcatcgtgggaaacgtagttctaaa
ggaaaaggcaggaaatcggagcagagcagcacagagaaacctccgctgccccctacagga
ccggaggacaaaacgacggagcgcggcctggagcagctcacgcagggactggccggtttg
gatatcagtcaaacctccggcggtcacactcccgctacctccactgcggtgggcggggcc
aggccgaaggtccgcctcagcccagagaaggtcacctgtgaaggtgaagtgaaggcggag
tcagaggaagtgacgcccgagcagagccaatcagcagagagtacgctgccgcagcctcaa
gctgttgcagcgtcagagtccgttgccccctctggtggagcgggggcggagccagaggct
gagggagcgtgtggttggtcgaagcctctgacgtctctggagctgaagtgtggaggacag
acggacactcctctgtacgtggtggacccgctgccctggtgtcctcacctggatgccgtt
aagcccctccccccctcaggtatagatgtcttcctgccgtgtcaggactgcggctctgac
gctgagaactggacctgtctcacctgctaccaggtgttctgtggtcggtatgttaatgag
cacatggtgactcacggcgttgtgtctgaacacccgatggtgctgagcttctctgatctg
tccgtgtggtgttacctgtgcgagtcctacgttcacaaccagactctgtttgaagctaaa
aatgctgctcactgggcaaagtttggagaagagatccctccgtggagctaa
DBGET
integrated database retrieval system
