Micropterus salmoides (largemouth bass): 119906777
Help
Entry
119906777 CDS
T07309
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
msam00535
]
119906777
Proteoglycans [BR:
msam00535
]
Extracellular matrix (ECM) proteoglycans
Others
119906777
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
DUF4959
VWA_3
vWA_SIBA-E
SSP160
Dicty_REP
Motif
Other DBs
NCBI-GeneID:
119906777
NCBI-ProteinID:
XP_038580049
LinkDB
All DBs
Position
Unknown
AA seq
1875 aa
AA seq
DB search
MQFSVNLSLCLLGFVLVCLFPQPARGQVSSPRRFRAKILSPTKLHVSWKEPKGEFESYKV
IYTTRPGGEQKEVQLSKHEAKLLIQDFDPSKEYNFKIIAVSGGKQSKPLQAKHEAQRQGV
EVVQSQRGQDSGVTDENNEISEASEGFMCKTPAIADIVILVDGSWSIGRINFRLVRTFLE
NLVKAFTVEFDKTRIGLAQYSGDPRIEWHLNAHTTKGAVIDAVKNLPYKGGNTLTGLALT
FILENSFKPESGSRPGVPKIGILITDGKSQDDVIPPAQSLREAGIELFAIGVKNADENEL
KAIASPPEKTHVYNVADFGVMSDIVEGLTKTICDRVEQLDKQLKGGGEPAPPSTSVAPPR
DLVTSEITARSFRVRWTHAPGQVEKYRVVYYPASGGQPEEKVVQGTENNVELNYLNSLTE
YQVAVFAIYRSSASEALRGSATTLALPTVNDLELFDITHSTMRVRWKTAAGASGYMILYA
PLTEGDPADEKEVKVADSVNEVELEGLTPATEYTVTVYAMYGEEASDPMTSQQTTLPLTP
ARNLRFSDVDHSSARLTWDSSSRKVKGYRIMYVKTNGVQTTEVDVGRVTTWLLRNLTSLT
EYTVGVFAVYDEGQAEAVTDSFTTKTVPDPLDIKSSDISTNSFRVSWQHPASDVVLYRLT
WTSTDGGDSEEVLVNGNINTYLIKGLSPSMEYEVLLAAIYSNEVESDEMVLVESTAEKAT
TAATTTTTTTTAAAPRLGVKNMRIDEETTFSMRVAWQPVDSRNVRHYQLSYISAKGDRAE
ETRTVPTGQNSLILQPLLSDTEYKVTITPVYPDGDGPMVSRMGRTLPLSAPKNLRVSEEW
YNRFRISWDVPPSPTMGYRVVYQPVSAPGPALETFVGEDVNTMLILNLLSGTEYSIKVIA
SYTTGSSDALSGRAKTLYLGVTNLSVYQVRMASLCAQWQPHRHASSYRVIIESLLNGQKQ
ETKLGGGSNRHCFNNLKPNTQYKISVYAQMLDGTEGPAVTATEKTLPVPTPAPTKPPTTT
PLPTIPAAKEVCKAAKADLVFLVDGSWSIGDDNFLKIIRFLYSTTGALDRIGPDGTQVAI
AQFSDDARTEFKLNSYSDKERLLDAINKISYKGGNTKTGRAIQHVKENIFTAEGGVRRGI
PNVLVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSDRHVFFVDD
LDAFKKIEEKLVTFVCEAATATCPSVPMSGSTTPGFRMMELFGLVENRYSSVSGVSMVPG
TFNTFPSFHLHSDAFLAQPTRYIHPEGLPSDYTITLLFRLLPDTPEEPFALWEILNKNNE
PLVGVILDNGGKTLTFFNNDYKGEFQTVTFEGPEIKKLFYGSFHKLHIAVSKTSAKVVID
CKMVGEKAINAAGNITVDGLEVLGRMVRSRGNKDNSAPFQLQIFDIVCSTSWANRDKCCE
LPGLRKEVDCPAMPKACTCTQDSKGPPGPAGPPGGTGIRGARGDRGEPGPVGPTGPVGET
GVPGPQGPQGPQGPSGRSIIGPPGAPGERGQKGEQGQQGVQGIPGRAGAPGREGPPGPRG
LTGKDGPPGRQGPPGTIGTPGAPGAQGNTGPQGKQGELGPPGSPGSKGEKGERGDLQSTA
SVQDIARQVCEQLIQSHMARYNSILNHVPSPPVSIRTVPGPPGEPGRPGPAGAQGEQGPP
GRPGFPGQNGQNGQPGERGQPGEKGEKGSQGVGVQGPRGPPGPPGPQGQGRPGSQGPSGR
PGNPGNPGRPGVPGPVGSAGPPGYCDQNSCMGYNVGEGGEEDVTDGGAVPPVQLPPNVYQ
NYGEAEEDDPYRYYQPNYPAPQPVAPDDPALALDDIELRSPGVYRSARSLEGEKESVGPK
RRLKRGAKTLSGLIK
NT seq
5628 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctcagtcaacctgagcctctgcctgctgggcttcgtactcgtctgtcttttc
cctcagccagcgcggggccaagtttcatcgccgcggagatttcgtgccaaaatcctgagc
cccaccaaactacacgtgtcttggaaagagccaaaaggagagtttgaaagctacaaggtc
atttacaccacacggccaggtggagagcagaaggaggttcagttatcgaagcacgaagca
aagctgctcatccaggactttgacccctccaaagaatacaactttaagataattgcagtc
agtggaggaaagcagagcaaacctcttcaggccaaacatgaagctcagcgacaaggtgtt
gaggtggttcagtcccagaggggacaagacagcggtgtcaccgatgaaaacaacgagatc
tcagaagcatcagaagggtttatgtgtaagactccggccatagccgacattgttattctg
gtggatggctcctggagtatcggccgcatcaacttcaggctggtcaggactttcctggaa
aacctggtcaaggccttcactgtggagtttgacaagactcgaattggcctggctcagtac
agcggagaccccagaatcgagtggcatcttaatgctcacaccaccaaaggggctgtgatc
gatgctgtgaagaacctgccatataaaggaggaaacacactaacaggtctggccctgacc
ttcatcctggagaacagcttcaaacctgagtctggatccaggcccggcgttcctaagata
ggaatcctcatcactgacgggaagtcacaggatgatgtgataccacctgcacagagcctg
agggaagctgggatagaactctttgctattggtgtgaaaaacgctgatgagaacgaactt
aaggccatcgcctcaccacctgagaaaactcacgtctacaatgtggcagacttcggcgtg
atgagcgacatcgtggaaggcctcaccaagaccatctgcgaccgagtggagcagctcgac
aagcagctcaaaggcggaggagaacctgctcccccgtccacctccgtggctccgccccgc
gacctggtgacatctgagatcacggctcgcagtttccgggtgagatggacccacgcacca
ggccaggtggagaaataccgcgtggtctactacccagccagcgggggacagccagaagaa
aaggtggtccagggaacagagaacaatgtggagctgaactacctgaactcgctgacggag
taccaggtggctgttttcgccatctaccgcagctctgccagcgaggccctgagaggaagt
gctaccaccttggccctgcccacggtgaacgacctggagctgtttgatatcactcacagc
accatgagggtccgctggaagaccgccgccggggcttctgggtacatgattctgtatgcc
ccgctgactgagggagaccctgcagacgagaaggaggtgaaggtggcagactctgtgaac
gaggtggagctggagggattgactccggcaaccgagtacacggtaacggtgtacgccatg
tacggagaggaggccagtgaccccatgaccagccagcagaccacattaccgctgaccccg
gcgaggaacctgcgtttctcggatgtggaccacagctccgcccggctcacatgggactcc
tcctccaggaaggtcaaaggctaccgcatcatgtacgtcaagaccaacggtgtccagacc
actgaggtggatgttggccgtgtgacaacctggttgctgagaaacctcacctccctgacg
gagtacacagtcggtgtctttgccgtctatgatgagggacaagctgaggccgtgactgac
agcttcaccacaaagaccgtcccagacccgctggatatcaagagcagtgacatctccaca
aacagcttcagggtgtcgtggcaacacccggcctctgatgtggtgctgtaccgactcacc
tggacatccactgacggaggagacagtgaagaggttctggtgaacggaaacattaacacc
tacctgataaaaggactcagcccctccatggagtacgaagtcctccttgctgcaatctac
agtaacgaggtcgagagtgacgagatggtcctcgtggagtcaaccgctgaaaaagcaacc
accgccgctacgaccaccaccaccaccaccaccgcagcagctcctcgtttgggggtgaag
aacatgaggatagacgaggaaacgaccttcagtatgcgggtggcctggcagcctgtcgac
tcaaggaacgtccgacattatcaactgagctacatcagcgccaagggagaccgagcagag
gagacgaggacggtgcccacaggtcagaacagcctgattctgcagcctctgctttcagat
acggagtacaaagttaccatcactcctgtgtaccctgatggagacgggccgatggtgtca
cgaatgggacgaacacttcctctttcagctcctaagaacctgcgggtatcagaggaatgg
tacaaccgcttcaggatcagctgggacgttccaccttcacccaccatgggctacagggtc
gtctaccagcctgtgtctgcccctggaccagctctggagaccttcgtgggagaggacgtg
aacaccatgctgatcctcaacctgctgagcgggacagagtacagtatcaaggtgatcgcc
tcctacaccactggatccagcgacgccctttcagggagggccaagaccttgtacctgggg
gtgaccaacctgagcgtgtatcaggtgaggatggccagtttgtgcgcccagtggcagcct
catcgacacgccagcagctacagagtgatcatcgagtcgctgctcaacggtcagaagcag
gagacgaagctgggaggaggatccaacagacactgtttcaacaacctgaagcccaacacg
cagtataagataagtgtgtacgctcagatgctggatgggactgaagggcctgcagtcact
gctactgagaagacactacccgtcccgactccagcaccaaccaagccccccaccaccacg
ccgctacccacaatccccgctgccaaggaagtctgtaaggctgccaaagcggacctcgtc
ttcctggttgacggctcctggagtatcggagatgacaacttcctgaagatcatccgcttc
ctgtacagcaccaccggagctctggaccggatcggaccggatggcacacaggtggccatc
gcccagttcagtgacgacgcccggacagagttcaaactgaactcgtacagcgacaaagag
cggctgctggacgccatcaacaagatctcctacaagggaggaaacaccaagacaggtcga
gccatccagcatgtgaaggaaaacatcttcactgcagagggaggagtcaggaggggaatc
cccaatgtcctcgtggtcctcaccgacggccgatctcaggatgacgtcaacaaagtttcc
aaggagatgcagatggaagggtacattgtgtttgctatcggcttcgctgacgctgactac
ggtgagctggtgagcatcgccagtaaacccagcgacagacacgtcttcttcgtggacgac
ctggacgcctttaagaagatcgaagagaagttggtgaccttcgtgtgtgaggctgcaact
gccacttgtccgtctgtaccgatgagcggcagcacaacaccaggtttccgtatgatggag
ctgtttgggctggtggagaatcgctacagcagcgtctctggcgtttcaatggtacctggc
accttcaataccttccccagtttccacctgcacagcgatgcttttctggcacagccaacc
aggtacatccatcccgaagggctgccctctgactacaccatcaccctgctgttcagactg
ctgccagacactccagaggagcccttcgccctctgggagatcctcaacaagaacaacgag
ccgctggtgggagtcatcctcgacaacggcggaaagactctgacgttcttcaacaacgac
tacaaaggagagttccagacggtcaccttcgaagggccagaaatcaaaaaactcttctac
ggcagtttccataagcttcacattgcagtcagcaagacgagcgccaaagtggtgatcgac
tgcaagatggtgggcgagaaagccatcaacgcagcgggaaacatcaccgtagacggactg
gaagttctgggcaggatggtccgctccagagggaacaaggacaactctgcaccgttccag
ctgcagatctttgacattgtctgcagcacttcgtgggccaacagagacaagtgctgcgaa
cttcctggtctgaggaaggaggttgactgcccggccatgcccaaagcctgcacctgcacc
caggacagcaaaggcccccccggccctgctggaccaccaggaggcacaggaatcagagga
gccagaggtgatcgtggggagccgggcccggtggggccgactggtccagtaggtgagaca
ggtgtaccaggacctcaaggaccccaaggaccacagggacccagcggacggtccatcata
gggcccccaggtgctccgggtgagagaggacagaaaggggaacaaggacaacaaggagtg
cagggaattcctggcagagctggagctccgggcagagaaggacctccaggacccagagga
cttacaggcaaagatggccccccgggaagacagggccccccgggaactatcgggactcca
ggagctccaggggcccaaggtaacacaggccctcaaggaaaacagggagaactgggacca
ccgggttctccaggaagcaagggggagaaaggcgaaaggggtgacctgcagtcgacagca
tcagttcaggacatcgccaggcaggtctgtgagcagctgattcagagccacatggcacgc
tacaactccatcctgaaccacgtacccagtccaccggtgtccatccgcactgtgccagga
cccccaggagagcctggtagaccgggacctgcaggagcccagggagaacagggacccccc
ggaagacccggcttcccgggacagaacggacagaacgggcaaccaggagaaagaggtcag
ccaggagaaaagggggagaaaggatctcaaggtgttggagtccaaggccccagaggacct
ccaggaccccccggtccccaagggcagggcagacctggcagccagggtccctcagggcga
cctggaaaccctggaaaccccggtcgacccggggtccctggacctgttggctctgctggg
cctcccggctactgcgaccagaactcctgtatgggctacaatgttggagagggtggtgag
gaggatgtcactgacggcggcgctgtccccccagtccaactgccgcccaacgtctaccaa
aactacggcgaggctgaggaggacgatccctaccgctactaccagcccaactacccggcc
ccgcagcctgtggcgcctgacgaccccgcgctcgccctggacgacatcgaactaaggtcc
cccggcgtctaccgcagcgccaggagcctggaaggagagaaggagagtgtcgggccgaag
aggaggctaaagaggggagcgaagacgctgtctggactaattaaatga
DBGET
integrated database retrieval system
